MmuINT0178529 @ mm9
Intron Retention
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83904705-83906756:+
Coord C1 exon
chr6:83904705-83904755
Coord A exon
chr6:83904756-83906687
Coord C2 exon
chr6:83906688-83906756
Length
1932 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTATAGCTTTTGTGATTTAGGGA
3' ss Score
5.17
Exon sequences
Seq C1 exon
CCAAATCTGGACAAATAAAGTCATCTACGGTCAAGGTGAACAAATGTGCAG
Seq A exon
GTATGTTGGTTTTATATACCCCATTTGTTTCTTGTAATGCTGGGGATTGAATGCACAACTTTGTGTGTTCTAGACAGGTGCCTCCACTATTGAACTACACTGCATGTCCTGTTGGTTTAGTTTATTAGGATTTTAGTTACTAAATTGCTAAAGAGTTGCATAGGCATAGATTCATGAGATAAAGTATGTATTAAATATATGTATTAATATTTGAGAATTAGTAATTTAGTTGTCAGAATGAGATTTAATACTGAGTGCTCTAATATTCTCAAAGATAAATAACTGGAGAAGCATTTCTGGGAATGAATATCATATTTTTTTCTTCCTCTTTCATGAATTATCTTTATTTTATATAGTTGTCCAGATAATGCACATACAATTTTTATAAACTATAGTTCTTTTTGTTGTTGTTTTTTGCTTGAAACTGAATCCCATGTATCCCAAATGGGTTCTGCACTTGCCATGTAGTCAAGGTTATTTTTAAATCCTGATCTTCCTGCTTCAACCTCCTGAGTGCTAGAATTACAGGTGTGTACCACCATGCCTGGCTTAGTGTTGTGGGTTTTTAAGTAACAATTACAATTTCTTTCACTTTACCCGGGTGTGTTCCACTGTTCTCCTTTCCTTCCTATTTCTGCTAAATACAGGTTATTTTAGAGATATTGAGGATAAAGAGTAGTGTGTTAAATTGTGTTCTTTGTGTTAAAAAGGTAAATGCCATTGTAACTGGCAGATTTGGCATTTTCTTGTAGTCTAAGATAGTCTTCTGAGATGATCATCATGTTTTAGGAAACTTTTTGAAATTTCATTTATTTAACAAACAATTTTATTTAAAGTTTATTGGAGTCTCAAATGGAGATCACTAGGCTGTGAACTAAAAGTGCTAGCCATCCATTAACTGCTGGGGATAAATGCTAGGTAGGCATTATTTCCTTCAATTTCTAGTGTCCTCATCTAAGTGGTAAAGTGACTTGTCCATGATAATAACAGGTATACATAAAGAAATCTCTTAACTGACTTACTGAGGTTTAGTTTATTCAGGATAGCAAACTTGTAAATTGCTAATAATTGACTAGTTAAGTGCCAAACTCTTAAGGGTTGGTGCATAATTTATCAATTTTGGACAAGGATACATTCTATATTCCAAAACATACAATAAATGTCTGATATTGAAAAAGTCCAAATATGTATATGCTTCAGTGTTAACTAATATATTTTTATATGTACATATGTTCATATATGTATATTTACATATGAATATGTGAATAGGTACATATTTTATATTTGCATATATACATACATATATATGTATGTATATGTATGTGTGTGTGTATATATATATATATGCATATACACTTGTAATTAAGAATTTGAGACAGGGTTTTATTATGTATCCCAGGATAGCTTGGAACTCCTAAGTAGACCAGCGTGGCCTCCAACTCAAGAGATCAGCATGTCTCTGGCCTGTTGAGTATTGGGATTAAAGGGGTGTGCCACACCTGGCTATGATAGTTTTAATTTGTAAATTGGGCACAGTAAAAAATTAGTTATATGAACAATCTTTATGTGACCTTCATGTGTTTTTAAATGCATTTCATGAACTGTGATCTAGAGAATCAATCATTGAGAGCCTTTGTATAATTGCTTTTGGAACCAGGGAACATAGGAGATTGCTTTGTGCCATTGTATTTTAGCTTTTAGTTGGTTCATACATTCAGAGAGATATTTAACTTAAATCCTACTTTCTAGTAACCAATACCCCTCTCCTAAAGAAATTATCATAGCTAGATGTCCCAAAATATGGAACCATTTTATATTTTGAATAAAATACTGTTATTCTTATATTGTTTTTTTAAAAATGAGGTTCTTTGGAGATTGATACTAGTTTTGTACCAAGTAAAAACAGTTTTGACTATAGCTTTTGTGATTTAG
Seq C2 exon
GGAAATCAGCGGGTTCTGTAAAATCTGTGGTTACGGTAGCTGCGAAAGGTAAAGCTTCTATCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-Zfml:NM_008717:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.563 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: