MmuINT0178533 @ mm9
Intron Retention
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83928988-83934068:+
Coord C1 exon
chr6:83928988-83929903
Coord A exon
chr6:83929904-83933969
Coord C2 exon
chr6:83933970-83934068
Length
4066 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
TTAACTTTTAATGACTTTAGTTG
3' ss Score
4.35
Exon sequences
Seq C1 exon
GAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATGAAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAAGGAAAAAGAAAGGAAGCCCTCAAAATTTCTCCTTCCCCTGAACTTAACTTAAAAAAGAAAAAGGGGAAAACTTCTGTCCCTCACAGTGTTGAGGGAGAATTGTCCTTTGTAACATTAGATGAAATAGGGGAGGAAGAAGATGCAACTGTGCAAGCTCTAGTCACTGTGGATGAAGTCATTGATGAAGAAGAGCTCAATATGGAAGAAATGGTAAAAAATTCCAACTCCCTTCTTACCTTAGATGAACTAATTGACCAAGATGATTGCATTCCCCACAGTGGACCTAAAGATGTTACTGTCCTGTCGATGGCTGAAGAACAAGATCTACAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAGTAGAAGAGTCAGCAGACATAACTTTTGCTACTTTGAATGCTAAAAGAGATAAAAGGGATTCTATTGGGTTCATTTCTTCCCAGATGCCTGAAGACCCTTCCACTTTAGTTACTGTAGATGAAATACAGGATGACAGCAGTGATTTTCACTTAATGACTTTGGATGAAGTAACTGAAGAGGATGAAAACTCTCTGGCTGATTTTAACAACCTTAAAGAAGAGCTGAATTTTGTTACTGTGGATGAAGTTGGAGATGAGGAAGATGGAGACAATGATTCAAAAGTTGAGTTAGCACGAGGCAAAATTGAGCACCATACAGATAAAAAAGGAAATAGAAAGAGGAGAGCTGTGGACCCAAAGAAGTCAAAGCTTGATTCTTTCTCCCAAGTAGGTCCAGGAAGTGAAACTGTTACACAAAAAGATCTGAAAACCATGCCTGAAAGACATTTGGCAG
Seq A exon
GTAGATACTTGAAAGTATTCATTTTTTCTGTTTCATGAGATTACATTTAAAACTATGAACACAGTGCCACAGTAGGAATAATGTCATTCTGTTGAAATTCTGTAAGGTGGCAGTTACAACCACTCCACAGAACTTTGTTTTCCACAGAAACAAGGTGTTGGTTGCACACATTTAGTTTACAGAACACAGGTTGTCCCAAGTTGTTAAACCTCAAGAAAGGATGTCAAAACTGGGAGACAAAGTGAACCAGCCAGTGTAGAGCTTCAGTGAACACATTGTGTTATGGATGGAGGAACAAGCTTTTAAAGAGGAGAATACTGTTCACATTACAGTGCCTCTCACTTTTAGCTTAAACTTAGGTTTAGGACAAGCAGGAGGACAAATTATTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTAAGATAAGGTCTCACTGTGTGAACCTTTTAGACCTGGAATGTAGACCAGGCAGCTTTGAACTCACAAAAATCAGCCTATCTCTGCTTCTGCTTTCTGGGTACTGGAATTAAATGTGTGAATAACCATACCTGGAAGATTTTGGTCTTTTGAGATGAGGTCTGACTCTGTAGTTCATGTTGGCCTAGAACTCAGAATATAGACTTGAACTCAGGATATTCTTCCTTCCCATGTGCCAGGATTACAGGTGAGAGTTACCACACTTGGCATAGCATAATATTTTGATGGTATGGCATAATGGAGCAGCTTGCTTGCTTATAGGACATGAGAGAGACCAAATTAATTTCCATTTAGAAAACTTTGAACTCAGTCGCCATAATATGTTACAAAATAAGTCACCCTGATGAGAAGGAATTCAAATAGTAGTTTATTTTGTTTCCTTAGATGTTATAAATGAAGCTATTTAATGTGTTAATAAATGTCTACTTTGTAAAAGTTAAAAAAAGCAAGCCAGGTAGTGGTAGTGTGGGCCTGTAAGCTCAGCACTCAGGGGGCTACTCAGGCAGTCCTCTGAGTTCAAGGCCTGCTTGGTCTATAGAGTCAGTTTCTGGACAGCCAGGGCTGTTTGTTATACAGAGAAACCCTGATTTAAGAAAAAAGAAAGGAAAGGAGAAGGAGAAAGAAGGAGAAGGAAGGAAGGAAGGGAGAGGGGGGGGGAGGGTGAGAGAGAGAGAATACCTTGAAATATTTAACTAAACTAAGAATGGAATATCAGGAACATCTTTTTGGATTGGCAACAATTCAGGGGAAAGTATAAAGCCATACTGTGAAAAGAATAGGAAGGGACAATTTTTCAGAACACAAATGGAAACATGTTATTCTAACTAAACTGCCTTTTAACATAGATTTCTATTTAGTGTTAAGTTTCTCTGCTGTGTGTGCTGGCACATGCCTGTAATCTAGCACTCAGCTTCAGCTACATAAGAAAGTCCCTGTGAGCCGGGCGGTGGTGGCCCATGCCTTTAATCCCAGCACATGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACTCTGTCTCACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAGCAAAACAAACAACAACAGAACCTAACTAAAGAAAGACCCTGTCTCAGAAACACAAGGCAATCTCCCCAAATTTAGGTAGTTTTTTGCAACAAATATTAGAATTTCTAGATAGTTTAATATGCTAAATTTCAAGCAATTTAAATACTGTTAATGAAGCAATAAATTAGGCTTTCTTTTTAAAGCTAAAACGCCAATGAAGAGAGTTAGAATTGGGAAATCATCACCCTCACAAAAAGTGGCAGAACCAACAAAAGGCGAAGAGGCCTTCCAAATGAGTGAAGGAGGTAAAGGGGCTATTCGGGTGGGGAAAAAACACACAACATGAGATCATGATAGAGCTTTGACATATAACCAGGCAAGAAACTAGAAAGGCAGCAGCCAGGCTTAGAAGAGCCTTGTAAACTTCTTTCTTCATAATTTAGAGAGATTTTGGAACAGTGACAATAGAACAAAAAAATATTTGTGGAAATTACTCACAAGATGTTATTGTGACCATGTTCTAGCATCAGGGATCAATAATTTATTAACTGTCTGTTTACAGGCATCCAGCCTGTAAAAAACAGAATGCTTAATAATATTTAAGTTGATGCAAATAAGGAACATTGTCACCGATAAATAACTTGTTATTGTATCTAATATTTCATTGTATCCTATATCCTTCCTGTTGTTGACAGTAAAATACTAAGGTCATTCCTGATTTCTAAGAGTGCATTGATAGGAAAGGCAAAGGAAAGTGTCTTCCAGTGTGACGATATCCCTTCAGCATCTTCTTTGCAGTACTGAGGAAAAGTTCTTTGAATCTGATCCCTCTACCCTCCTTTCCTCCTCCAACGTCTATTAAAACTCTCTTTATTTTATTTGCTGACCAGTGGTGACGATATTTCCTTCTCCATTACCTAGCTAACTCACACTGCTTTCTTTTATATTTACCTAAGAAAATGAATCTTCTCTGATGGCCACCTTGAGTTTTACCTTTATTGACTCCTTACACATAAACTACAGCAAACTTCCTATATCATTAGAGGACAAAAATCAATGTTGGCTTTGGAATTCCCCTAGCAACAAAATACAGCATATAGAATAGTGGTTTTCAGCCTGTGGGTCACTACCCCTGTGGCAATCCTCTGTCTTCAAAAACTACTTAGATTACGATTCATAACAGGAGCAAGATTATAGTTATGAAGTAGCAACAAAAGTAATTTTATGGTTGGAGATCACCACAACATGAGGAACTGTATTAAAGGATCACAGCATTAGGAAGGCTGAGAATCACTGATCCAGGTATTTAAAAAATATTTCCTCTCTTACTTTAGTCTTGAGGTCTTGGCATTGTTTGTTACTGCTTATCATGTCCCAAACTGGTATCCCTTCTTTTCTATAACAACTTTTTACAGTAAGCTGTAGTTAATAGTTTTATCTCACCAGTAGCTCCTAATATGAATTCCTTAAGTTTTAGGTTTTTTGGTTTTTTTTTTTTTTTTAATCAAAGATTTCTGGTATGTTAGGTCAACTTTGACACCAGGTTGCTTAGAATTGCTTCTTCTCAACTGAATAATATAGGAGAGGTAATTTATTTATGGTTCATTTAATAATTGTTTTTCCATTAATTTCCTCAAAAGACCTAATAATGTCAGAAAGTCATTTGCAACTCAGTTTTAAATTTAAGTGATTTATTTTAGTTTACTCTTAGTTATTATATAGCTTTTATATAAGATACTGTAGTGTATAATCAATCCATTATTAACATGTGTGTGCCTTTGGAATGCTAGGAGCAAATACAATAATAAATAAGTTAAAATTTATTACTTGAGTAAAGAAAAAAGAAGAGATCAGAGGCAGAGAGAATAAGTTGTTTGACCATCGAGCCAAGAAAAAGGCTGTGTACACCCTTAATAGACTTAAGATTTGACTCTAGAACAGAATTACTCTTTGCTTGTGCCTATTTCCATTAATCTCATGCATTGCCTCCTTATAAATTAACATTGACTCTGTCAGGTCTACAGAACTTGACTCTTAAAAGGAGGACTGTGAGGGAGAACAAGAGACAGGGATGGGAGTTGACGAAAGGATTGTGTTTATTTCATGCAGAATCTAGATTTAAGTAGATCATGAGAACAGGACTGTATTTGAGAGAAAGAAGGGCAGATACAATTGAAATACAGCGATGTGCAGATCACAAAGATATTATGAAACTCGCTATTTTCTACTAAAAATAATAATAATTATGTCACCCTTCTCCTTTCTAGAGCTATACCAATAAAATTTTACATAGGCTTTAGCCGTATATCTCCTACACCCATTGAATATATCTATATTTACTCATTTGCTTCTTGGATCAAGGAATCATTAACTAAGGCATAGTTTAATGAGTTTTAAGAATAGTTTTGGAATATGGAGAATATCCAATGTTAATTTGACAAATATATCTATTTTAAATAACTTCATGTTTTTCCTTTAACTTTTAATGACTTTAG
Seq C2 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-Zfml:NM_008717:24
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: