MmuINT0178666 @ mm9
Intron Retention
Gene
ENSMUSG00000050954 | Zfp169
Description
zinc finger protein 169 [Source:MGI Symbol;Acc:MGI:1915161]
Coordinates
chr13:48594149-48602362:-
Coord C1 exon
chr13:48602276-48602362
Coord A exon
chr13:48594276-48602275
Coord C2 exon
chr13:48594149-48594275
Length
8000 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GAATGTGTTTTTTGTTACAGGCA
3' ss Score
9.15
Exon sequences
Seq C1 exon
ATTGGACTCTGAAAGCAGACTCCTCTCCAGGGAGAATATTCTGGAACGTGGGAAATGGCCCCAGGGCTCCTGACAACCAGAGACAAG
Seq A exon
GTGAGTCCTGACATTTCCCATACTCCTTTGCCCTTTTTCCTGTCTGCAGTTTTCCTTGAGGGTGTAAGGCAGTGCCTACCTCCATCTGGGAGGTTTAACCCATCTTACCTGGAGTTTATAAGATTTCTTTGCTTTATTCATGACAAAAACATTTTCCGGATAGTTAACTATGATTATCACACAGCTAACATGAAAACACAGGTTATCCAGGCTTATGTATCCTGTGATTCCCAAGGCCTAATAAGAGATGTATATGAAGGCCATCCCTCCCCATGTGTGCATATGCACACTAGGGCATGGAAGCCAGAAGCCAGCCCTGGGTGCAGATCTTCAGGAGTCATCTGTGTTGTTCTTTTGTTGTTGTTGTTTTGTTTGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATCCACCTGCCTCTGCCTTCTTAGTGCTGAGATTAAAGGCACCCGCCACCACAGCCGGCATCTGTGTTGTTCTTTTGAGACAGAGGCTCACTGACTAAGCCAGGCTGACCTAGGGAGCTCCAGGAATCCTGTCTCCACCTCTCAGCACTGGCGTTTCAGCACCTGGATTTCTGCATGGGTGCTGGGGATCAAACTTGGTGCTTATGATTTCCAGGCACACATTTTCTCAGTAGCTGCCTTCCCAGCCTCTAGGATGGATTTTGAAGGATTTTGCAAGCTGGAGAGTTGAAGACATTTTGAAAGGACTGTCTCAGAACTTGTGACTGCATGCTGTCATTTACTATGTCAGAAGCTTGCCCTGGCCAGCAGTCTCTGATACATTAGTTTTCTTGGAGAGGTCAGATGGTATACGTGGTGTACATGCAGTGCATGGATGGCTCTGGCTTTGTGACCACCATGCTTTGTGTTTGAGCTTTCTTATATATGTGTTCCTTCACTGATGATGTCCTGAAAGCCCATTATAACTTTACACTGTAAGTAGAAAGTGGATTAAATACACCCAGTGTACCCCATGTAAGAACTTGGCCTCCGAGGGCACCATACAGCACCAGTGACTTGCCCTCACGATCACATGGCTCACTAGGAGCTGCACCTTGTCGCTACTGACTAGCTCTATACAAATGGCATACTGGGTATTCGTGTTCAGGAAGAAGTCAAAATCTAGAATCAGAGACCAGCCTCTACCGAGTGAACATATATAACTTTGTACTGCTGTAGAACGAAGAGCATATGCTGAACCATTTTAAATTGAAGAGGCATCCATGTTTAAGAGATTGGAAGGTGGCGCTTAACAGTCTGGACTGGGCTGCGTGATAGGGCGGCTGATGAAGTTCTTGTCCTATGAGTTTGAGGACCTGAGCTTGATTCCTGGGGAACCCATATTTTTTTTTTTTTTTTTTTTAAAGAAAGGGTCAGGGGACACTGGAGGACCACTCAGCAGGTAAGAGCGTTCTGGGTGTGATGACGAACGCCTTTAATCCTAGCACTCAGGAGACAGAGGCTGGTAAATCTCTGAGTTCAAGGCTAGTCTGGTCTACAGATCAAGTTCCAGGGCAGCTATAGCTACACAAAGAAACCCTGTCTGCCTTGAAACAAACAAGCAAGCAAGCTCTGTGGAGAGCTGGAGTTTGGTTTCTGTCACTCACATTGGCTGGCTCACTACCACCTGTAACTCCAGCTCTAGGGAACCTGGAACCCTCTTCCTGGCCTCCCTGGGGCAGCCGCGTTCATGTTCACATACATAATAGACATAGACATAGACATAGACATACACATACACATACACATACACATACACATACATACACGAAGTCAGGGGATGGCAAGATGGCCCAGTGGGTAAAAGCGCCTGCTGCCAGTGACCTGAGTTTGATCCCTGTGGACTCACATGGTAGAAGGGGAGAACCAAGTCCTGCAGGTTGTCCTCTGACCTCTACACATGTGCTGTGCTATACATACATGTTACCCCCCCCCCCACCAACACAAGTAAATGTTAAATCATGTCAAAACAACTCAAGTGGTGGTGCATGATTGCAACCCCAGTGCTGAGGAGGCAGAGAGAGGCAGATCTCTGGGGCTCACTGCCAAGGTAGCCCAGCACGTTTAATGAGTCTTAGGCCAATGACAGATCTTGTCTCAAAAAACAAGGTAGACACCACTTGAGAAATGACAGCTGAGCTTCTTCTCTGGCTGCATATGCGTGATCATAGGTGTGTCCCACCACATCTGGCTCCTAGAGAAGTGTTCTTCGTCAACAGTGGTTAATAAAATTGTATTTTCAGTTACTATATTATGTACCAGATCTGAATTGCATAGAAATATCTGACACATCCGAGACACAAACACACACACACACACACACACACACACACACACACACTATATATATATGTGTGTATGTATGTATGTATTATATATGCATATCTATATATATCATATATATGAAGGAATTTGGTTGAAACTTGAACTATGACATTAAAGATCTGGTAGGTACAGGATAATAGCTGATTAGAAACCATTTAACAGACCTTCGTTGAATCTTAAGGTTGTTTTTCAAAGTCTGCTATAAACCATAATATGTTTTACAAAAAAAGAAAAAAATCACCACACTTCAAGCTCCATTACTGCAAAGACCCTCATTTGATGACAAGACCCATCATTGGAATTTTAAATGTTAAAAATGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTCGTTGCTCTTGCAGAGGACCTAGCATGGTGATTCATGACTATCAGTAACTTCTGTTCCCGGGGATCCAACCTCCTCTTTTGAATGTTGCACCCGGCATGCATGTCGTGCAGAGATACACAAAACACTCATATACATGAAAAAAATTACTATGAAGTTCACCCATAAGAAATATGTAATTCAGTGGATTTTTGTATACTATCAACTAGTGTATATTAAATTGTACAGCCTTCACCACCATAATGCTTTTGTTACTTCCAAAAGGAATCTTGTACTTGCGGAGTTATTTTACTCCATACTCTCATCTTCCAGCTTCTGTTAGCCACTGTGGTGGTTTGAATAGGAATGGCTCCCATGGGCTCGTAGACTTGAATGCTTGATCATTAGGTAGTGGTGGTGTTACCTGACAGGGATAGGGGTTATGAGTTTGTTGGAGTAGGTATGGCTTCGTTGGAGGAAGTGTGTCACTGTGGGTGGACTTTGAGGTTTCAAATGTTCAAGCCAGGCCCAGTTTCTCTCTCTCTTCCTGCTGTCTGCTGATCTGGATGGAGGTCTGGCTATCTCTCCAGCACCGTGTCTGTCTGTGGGCCACCATGCTTCCCATGATGACTACAAGGGGCTGAACTGCTGACCCTGTAAGCCAGCCACAATTAAATGTTCTTCTTAGTAAGAGTTGCCGTGGTCGTGGCGTCTCTTTACCACCATAGAACAATATCTAAGACAACTAATGTAATTTGTATTGTATGGATTTAACTGTGGATATTTTATATGAATATAACAGTTAAAAAAGAGTATGTAATGAAAATGTCATAAAAGAGAAATCCAGGTCTTCCCATCAAGAAAGCAGTGAGCTGACCGAGGCAGTCAGAACCAGTGTCTGAAGAATGATGGAGTCTAGTCGGAACTGGAAGACACTGTAGAAAGAAACAGCCGATGCTCAGTGGCTGGAGACCGCGGTGATATTTTCAGCTGCCGACCTACCCTTAAGTTGTCTGTCTGCTAAGTGACCTGGAGGAAACGCAGCATAAAGAGCTTAGGGAACTTCGGACCTGGAATCAAAATAGTTCAAGTCAATAGTGTTTCAACAAATAGAGAATCCAGTAAAGAAAAATTATAAAAAGAAACAGTCCACAAATTATAGAGTTATAAAGCATATTGACTGGAGTGAAAATTTCAGCAAAGGCGTTCAACAGCCTATCGGGTAGACCGACTGAAGACTGGAGATAGTTCAGCTGTGTGTCCATTCTAAGGAGCAAACAAAGAATGCAAGAGCAAGTAATTAAAACCAGAACTTGAGAGAGCCCTGGGCATCAGTCGCTATACTGATGTTCACAGTGGGAATGTAGGAAAAGATACAGGGAGGAGGAGAAGAAGCAACTTCTATAAGGTCGGTGAACAATGATCTGTACCTGTAAGAAGCCCACAGACACCAAGTAAGATAAACATTAACCAAACCAAACAAAACACCACACCACGATTTTAATAACCACAGACAGAACTTTTGGAAGCAGTTAAATGAGAGGTGACTCATTTCCCATAAGAGAGTCCCTGTGTGATTAAGCTGATTTCTTATCTGAAAGCCACTACGAGTCATTGAGATAGCAAATTAGTAAGAAAGAGTGAAATGATCTCTTTACTCGGAACCTGAGCCAATACCTTAAAGCTGTTGAGGACTTCTCCTTCGTCTGTGTATTTTCCCCAAGAGTCTTTTGTTGAAACAAGAGAGGATCTGGGGGAAGAGATTAAGTCATCGGGGCAGAAGTTACTGACTTATAAAGGGCCTAAAGAGAACTAATTTGGCCCCTTATGTCTCCTTTGTCCCTCCCTTCCCTATGAGATTGGTGTGCGTCCCCTGTGAAGTTTACAAGACACTGTCTTGAGAACAGACGAGGCCCTGCATTAACACTTCCAGTTGACTTCTAGCACCCTGAGAAAGAAAAATTCCAGGCATTTGATTAGGCCATCATGAGTCGAATAACATTTCCAGAGAAAAAAAGATGGTTAGAGTTAGCAAATTCATCAGAGTAATAAAATCTGCAGTATATATAACCAACTTGCACACTCTATCTTACCACTGATCTGTTTGTGAATAAAGAAGAAACAATTCTTTCAAAATAGCACCCAAAAATTCCTAGAAATAAATTTACCAAGGAAGCCAAAGATTTGTTCACAAAAGCATTTCTGGGAAAAAAAAAAAAGACTTCAAGAAGTACACAGGCTTTTGCTTACAGTCTTGGCATCCTGAATGACTGGGAGAAGCTAAGCGGGGCCAGGCCTGCATGGAGAAAGACTCCCCATGCTTGTGATTGGATGACAGTACCACCTGTGACCAAAAGGTTCAACCCCGTTCGTACCAAAGTGCCAGTGACTTGAGGGTAGAATTCTACCACACATTAAAGGCTTAGCATCAACGCTGCACCTTCCTCCCAAAACTAGAAGAGGAGGGAACACCTTTAAATTTTCCTTTATGGAGAAATATCATCTTGATATCCAGACCAGACAAGTGGGGTTCAGGAGAAGGTTAGACCATCATGCCCTGAAACCTACCCCTGACGTGACTTGTCAAGCCGTGAGAATAAATCCGTGCCATCTTACCATAAAGTTTATCATTTCCTATTTTAAATGGACAATTCAGCGTCATCAGGTACATTCACAGCTGGGTTAACGTCACCGCCATTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGAAGCTTCAGTTGAGGAAATGCCTCCATGAGATCTAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCTTCTCAGGGCTGGTAGTCTTGGTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGTGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTATAAGCCGAATAAACCATTTCCTCCCCAACTTGCCTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAGCCATCCTTTTGCTAAAAGAAGTGCAGCCTTTCTCCCCTTGTGATGGGCATAATTCACTTGATGCAATAGTTTCAAGGCCTATTCTAGAAAATGCAGGTAGGATTTCCTCTTCAGTGTTGATGTGTGCTACTGTTCATGTCATCATTTGTCACCATTTGTTAGCCACCTGGGTGGTCTCCACCTTCAAGCAGCTGTGAAGGATGCAGCTGTGAACATTGTCCTACAGTGTTCTGGGTTTGTGCTTTTAATGTTAGGGAATTACTGTTGTATTACTATCAAACTTTCCTCTAGAAATGTCTCGTTTTATGTTCCTGCCAGGAGTGTGGAAAGTTTCAATTTCTCTGTATACTTTTAATTTATTTATTATTTATTTATTTTTGAGACAGAGTTTCTCTGTGCACCCTCGGATGTCCTGGACATTGCTCTGTAGCCCAGGCTGGCCTCGAACTCACAGAGATCCACTTGCCTTTGCCTTCTGAGGGCTAGGATTAAAGGTGTGAGCCACTGGCTGGCTCTCTGAATTTTTCGATGACCTGTTGCCCTGATTTTTTGATAATAGCTATCCTAATGTTCGCATGTTAATGGTGAAGAACTGAATTCATTTTGTAAGACTGAGGATAAGCACAGGGTGTCTGTTTTCTCCGTTCACTCCATGTAATGCTAAAAGTTCGAGCTAGAGCGAAAAAGTAAGGAAAGAGTAAAAAACTAAGAACTAAAACTCTTCTTATTTCTATGTGGCATGATTGTCCCTGTAGAAAAATCTCAAGGAACTTAGCAGAAAAACTTCTTAGGGCTTATGAGAGAGTTCAGCTAGGTTTTAATCAAATAGCGATATCACATGCCCTGTATATTGCAGCAGTGAATATGCATTCAAACTCCAGGCCATCAAAATCACACATATAACACACATAGAAATTCTCAAGTGTAGTATAATAAAAATCCCTGTAGGATCTTAGTGCTGGAAATTACATTTTGCAAAAGAAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATTTCTGTCTCTGTCTCTTTGTCTCTGTTTCTCTGTCTCTGTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTGTAAAGACAGGAAGATTTTGACATAATAAAGCTGTCAGTTCTCCCCGGATGGAAATACATGGTGTGCTAGCTAGGTTCGTGTCCACTTGACACAATCTGTAGTCACCTGGGAAAAGGAAGCCTCAGCAGAAAATGCCTTCAGGATTGGGCCAGACTGTGGAACATTTTCTTGGTTGGTGATGGTTGGGGAAGGCCCAGCCCATGTTGGGTGGTGCCATCCCTCAGCTGGTGGTTCTAGATTCTATAAGAAAGCAAGCTGAGCAAGCCAGAGGGAGCACCCCCTCCATGGCTTCTGCATCAGTTCCTGCCTCCAGGATCCTGCCCTGTTTGAGTTCCCATCCTGACTCCCTTCAGTGATGGCCTATGATGTAGAAGTGTAAGCCAAATTAACCCTTTCCTTCCCAACTTGCTTTTTGGACACGGTGTTTAATCGCAGCAATAGAAACCCTAACTAAGACCTCATGGTAAACAAATTCTGGTAAAGTCATACCAGTTTCTCTTGTTTGTAGGTATATACAGGGTTGCTCTAGAACTTGTATAGGAAGGCACAGGGTATTTTAAAACAGCTAAAATAACTTTTAAGTGATATTTATCAACTGTGTATGGTGGTACGTATCAAATCCCAGCTACCCAGGACGCTATGGTAGGAGAGTTGGGAGTTGAATTAACATGGACAGTATAGCAAGAACCACTACAGGTAAAGTAAATGAAATGAAGAGTAAAGTGGAAGGATTTAGTCTTCCTCGTTTAAAGCCCTGCTATATATCCACACATTAAAACTGTGGCTTTTGAAGGTCTTGTATGTGCCTAGAGCAAAACAGGAAACCCATCATCTCTGGTTTCAATGTATAAAACTGGCGTCCATACAAGGGAGTTGTTTTCAACATACAACAATAAGGTTCAGGGTAGGAACCAGGGCCAGTCCACCTCATGCTTTTTCTGCAGTCACCCCATTCTTACTGCCTTGGTTCCGGATAGTGACAGGCTGGTTACTGGTTTTAGCCAGACTGCTGCTTTCACGAGCAGGAATGTGTTTTTTGTTACAG
Seq C2 exon
GCATTAATGGCCTTCCATGACGTGGCTGTGGCCTTCAGCCAGATGGAGTGGGAGCTGCTGAGTCCTGCCCAGAGGATCCTGTACAGGGATGTAATGCTGGAGAACTATAGCCACCTTGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050954-Zfp169:NM_001164576:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: