MmuINT0178759 @ mm9
Intron Retention
Gene
ENSMUSG00000061544 | Zfp229
Description
zinc finger protein [Source:MGI Symbol;Acc:MGI:2679295]
Coordinates
chr17:21870691-21873088:+
Coord C1 exon
chr17:21870691-21870925
Coord A exon
chr17:21870926-21873024
Coord C2 exon
chr17:21873025-21873088
Length
2099 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
AATCTCTTTCTCATATCCAGGAC
3' ss Score
8.99
Exon sequences
Seq C1 exon
GGTGGGACCAGAGTAGGCAACATATTCCCAAAAGCGGGAGAGGGCCTCAGCAAAACTCGCCTTTCCCTCAGAAATTTCCGGGGACACCTAGTGCAGAATCTGGGCCAAGGACACTGCCCAGGGTCTTGCGGAGACGTGAAAACTCCCGAGAGCCGCAGGTGCCGCGCGGGGCATCCTGGTAGAGTCAGCAGCGCGGCGGCGGAAACCGCAGCCCGGCGGCCCTGGAACCTCCCAG
Seq A exon
GTCAGAGGCGCTGCGGGGCTGGAGCGGAGTAGGGTGTGATCGGTTTCTGGGCTACTCATTAGGACTCTGCTCTCATGAGCTCCTAAGAACTGGACAATTCCTGACTTTTTTTTTTCTTGTAAGGTTTTCAACATATTCTCTTAAAAATCTCACAATTCTCTTTGTTAGTTCGGAAAGAACAAAACACTTTAAATTATCCAAGCTTTTCAAGAGAGTAGCATTTAGAGCTGGTGGATTGTCAACCTAAAAAACTTGTTAGATATTAGTCACATAAGGATCGACAGAAGAATCACAAATATATTTTCACAAACTCCACAGTTATAGTTGTAATCATTAATATTTACTCTGTAGAATTTTATCACTAACTTGACATCTGAGATGCACACATTCTATGATGTAAATACAGTACTCAAAATCTTGTATTCCAGGTGAGGGTCTTAATGTTACATCTTAGAGTCCAGAAAGTCACCTTATGCATGCTGAGTGTGAAGATATCAGACCCTACAGTATGTTCAGTGACAAAGCACCACAGTAGAAAGGACCTTTGCATAACTGTGGCTGCTTACTTACTTCAGAAAACAGTCTCCAATTCAATGTGCCCTTGGTTCATAACCTGCACTTTACTCAAGGGCAGGTGGCCAAAGTGTTGCTTTTTATTTCAGGATTTGTTGATCTCCAGTGATGTGGCTGTGGACTTGTCCCAGGAAAAGAGGGAATGCCTACACTCTCTTCACGGGGCTTTTTGCATAGAGACTTCATGTTAGAATTAAAGTGGGATAAGGTAGAAAAGACCATTTATTTGATACTGAATTACTGATTTATTGAATGATTTACTTAAAGCACTGCTGTAGTGTTCTGCAACTTCATCTTGCTACTTGGAACAGAATGACCTGGAGAGGTGGCGGAAACAAAAGTCTTGCCCTTACCTACCTTACCCGCAAAGCTTACATCTGTCAGCTGTAACCTGCATTTGAAAAACCTCCAAGCTAACTGCCTTGATGCTTCAGGGAAGTCCTGCTTACTTTCCTTCTGGCCCCACCTTGTGCTTATAGACTATAAAATGCATATAGGAACTGGCCTGGAGACCAGGCCTTTCAGAGCTCTCCCACCTTTGGTCCATCTGTGACATCTATTCTTTCACTGGCAGTGGTGTCTCAGAGTGCTTATTCTAGAATGATTACAATAGAAGCACAGCCTTTGGTTACTGTGTGTGAGAAGAGTTTTCTGGATCTATTATTTTCTCATCCTCAATTTCCTTCTCAAAGGAAGGGGCCGCACGTGTGTGAGCTCAGTGTGGCTGAACTTCACACCACAGCTCATTACAGGGAGAGATTCTCAAAGCAGGAAAGGACATTGTTATGAAGTGTTCTTTACTCCCCATGTTTCTCATTTGGGGAAGTGTTGGGTTTCTTTCATTTCTGCCCCATGGTAAATTCAGAGACTCAATAGTTTAAAATATTGTCATCCCAATCATGAAGTTTCATTTCTGCTCTTGAGGGGTTTTTAATTTTAAAACATTTTGTATTTGCTTGTGTGTTTTTGCTTACATGTATGTCTACACCACTTTCATGCCTTGTGCTACAGAGGCCAGAAGAAGGGGTCAGATACCGTGGGATTGGAATTACAGATGGTTGTGAGCCACGGTGAGCGTGCTGGTCCTTGGTCCTCTAAACAAGCAACAGCTATGAAACAATCTTCCCTGCCCTTTAGTTTTGGCTGAGCTGTGATAAGAAGTGGGATTCAAGTTATACAAACTGGAAAAGCTCCCTGAATCTTTTCAGTATTCTAACACCACATGACAAATGCGGAATCATTTGTAAAATTCTCTATTTAGTTTTCTCTTTATCTAATTGAGCATAGTACTGTGTTAGAAATCCTGGTACTTAGCCAGGCGGTGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTACAGGACAGTCAGGGCTGCACAGAGAAACCCTGTCTCGAAAATCCAAAAAAAGAAAAGAAAAGAAAGAAATCCTGGATCCTGGTACTTATTGATAAATCTCTTTCTCATATCCAG
Seq C2 exon
GACTCACTGATGAAGTGGAACAGCGAGTGCTGGATGGTGAAGAGAGAGAAGACAAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061544-Zfp229:NM_001164676:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: