MmuINT0178827 @ mm9
Intron Retention
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20245773-20246709:-
Coord C1 exon
chr9:20246624-20246709
Coord A exon
chr9:20245900-20246623
Coord C2 exon
chr9:20245773-20245899
Length
724 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GCATTTTTGTGACGGTTTAGGAT
3' ss Score
7.01
Exon sequences
Seq C1 exon
AATTGGAAAAGCAACTACAAACCAAAGATTTAGCACCAGAGCAGGATTTTTTGACAAGACACACCTTCATGGAGACACAGCAGGTG
Seq A exon
GTGAGTTCAAGGAAAAGGATATTTTTTTATTTTATGCACTTAGCCAAGATTGACTTTTTTTTTTTTTAATTAGAAGTCATGGAGAGAACTGGGTTTTTCAGTAGAAGGAACAATCTCTTATATACTTCAGAAGATGAGTATTAAGAGGATCCAAAATTAAAGTGAAACTGACCAAGAAGGCACATTTTCTCATGTAGACTTGCCCTCACAGCAAAACAAAACAGCAAACCAAAATTCCTTGCCATGACTGATTTTTTTTTTCCAGTTGAATTGCTCCAGAAAGGCTTGTGTCTTACTTACACTGGTGAGGAAGTCCCCTAAAGATCATCTCAGGATTTTAGTAACCATTGGTATTAATTTCTGTTAGTGATTTTGTGTTCTGACAAATGGTAAAGATGAAAGTCTTCATTTTTAAAAGAAGTAAACTTATTTTTAATCACATAACAAGTTTGAAATATGCTTGGGAATGTGCCACAACATAGGGGGTACGATAGAGTTCCTTGTATAGTGATGTAAGCTTATTTGCAAGAGGTGCAGAAATTCATGAATATAGAAGGTCTATTGAGTGACTGTGGATAGAGGAATGCTCTAGGAGTACTGAGACCTGAGGAGATAGATTATGGGGACTTAGTCTCTTTTAAAGGGAAGGATGTCACTTCCTCATTCTCCAGTGAGCATAGGTGATGTTTACTTTGCTCAAGCTGGCATTTTTGTGACGGTTTAG
Seq C2 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAGTGGACCTCACTGGACCCAGTTCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-Zfp26:NM_011753:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0),PF138701=DUF4201=PU(25.9=93.8),PF0059814=Flu_M1=PU(11.8=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGCAACTACAAACCAAAGA
R:
CTACTGTGGCCAGGTTCTG
Band lengths:
210-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: