MmuINT0178828 @ mm9
Intron Retention
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20244636-20245899:-
Coord C1 exon
chr9:20245773-20245899
Coord A exon
chr9:20244720-20245772
Coord C2 exon
chr9:20244636-20244719
Length
1053 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
ATATTTGTCTCTGTGTCTAGGAG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAGTGGACCTCACTGGACCCAGTTCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
Seq A exon
GTAGGGCTGCCATCCCTTGTTCTAGCTTCATAAGAGAACAGAAATACTGTTCTACAATATGGTGTCAGCTCAGAGATCATTGGGAAATGGCAGATGAAGTCCCTTAACATAATTTAATACATCATGGTAGTTCTCAACTAAATGGTGGTTAGTAGTGTCACTACTACTATGCTAATCATATAATTTTGAGATTTTTCCTCTTTTTGATTTGTTTTGTTAGTGAGGAAAGGTCTCATCCTATAGCTTAGGTTGGCTTCAAGCTCTTAGCACTTCTCCGATCTCAGTCTTCTGAGAGCTGGGATAGCAGATGTGGGCTATCACACATGGCTGTCATTTTTGGCAATCTTTATGAATCTGTTTCTGAAGATAAGAACTAGTGCTATCATTTTTTTCCCTATAAGTGTGAAGACCCATGCTGGGCACATTTCTGTGTTGTAGAGTGCTTGTTTAGACACATGAGGCCTTGATCTGTATCCCTGGGGGTGAGGGTGGGATAACTTTATAACACTTTAGTAATTAAATAATACTATATTAGATCTTATTGGGAAAAATGGTTCAGTGCACTTTGTTTTACATTTTTTTAAGCATAGAATTTTTATTAATAACGAAGGAATAGGGATATTGCATGTCATTAATAGTTTATTTATTTATTGATAGTAGTGGGGATAATTTAGAACTTTGTACAGTCCAGGTAAGTGCTCCACTACTGAGCCATATCCTTAGCCATTTTTTGGTTTCTTGAGATAGGTCTCACTCTAGTTCTATAGCCATGACTATCTTGGAATTCTTGTTTTTCTCTTGCCTCAGCCTTGTGAGTGTTGGGATTATATCTGTGCACACACAGTCTTGGTCCTCCCTAGTGGTTTTTAAATGTGCATTTGGTTCTAAATTTGGATTTGATGGGTCATAGAAATTTTCTAGTTACCAATAGCATAAATATTTGTATTCTGAGCTCTTTGTTAATAATTTTAAGTCTTTCTTGAGACATGTTTTCTATTATTGGTGAGTTTACATGAGTCTTTTCCATTGATATATATTTGTCTCTGTGTCTAG
Seq C2 exon
GAGGTCAGATGTTTAAACCCAGCCTGATCTCTTGGTTGGAGAAGAAAGTAGAGTTGACAGTAATAGAGCAAGGAATTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-Zfp26:NM_011753:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0),PF138701=DUF4201=PU(25.9=93.8),PF0059814=Flu_M1=PU(11.8=56.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF138701=DUF4201=FE(48.3=100),PF0059814=Flu_M1=FE(36.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGACCTTTGAAGATGTGG
R:
TGGAGAATTCCTTGCTCTATTACTGT
Band lengths:
206-1259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: