MmuINT0178829 @ mm10
Intron Retention
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20439522-20440275:-
Coord C1 exon
chr9:20440192-20440275
Coord A exon
chr9:20439605-20440191
Coord C2 exon
chr9:20439522-20439604
Length
587 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GTTTGTTTGTTTCACTTTAGAAT
3' ss Score
9.03
Exon sequences
Seq C1 exon
GAGGTCAGATGTTTAAACCCAGCCTGATCTCTTGGTTGGAGAAGAAAGTAGAGTTGACAGTAATAGAGCAAGGAATTCTCCAAG
Seq A exon
GTTAGTATTTGTTGAAAACATTTCTTGTTGATGTCAAATTCTGTATGTTTGGAAATGTTTCGAGGGAACTGTTAGAAGACCATCTTGAATCTGAAGTCCAAGGTCTTAGAAACACAGTTGTCATAGAAAAGGCCAATCTAAAGGGTCTGTGATGTCCCAGTTTATTGTTTTCTTTGTTTATCCTGTTTACTATGCCATTTAATTTTAATAGAAAGATTTGTAAATTATTATAGCTATGATACCATATCCTGTGCTTGTCAAATTTTAGATTTAGACAGTTGCTTTATTCTCTCTTAGTTTTGTTGTTTAATGTATTTTAATATGAAAACACACACACACACACACACACACACACACACACACACACACACACACACACAAGTAAAGTTTTGGTCTGGAACTCAGTTTTATAGACCAGACTGGCTTAGAATTCAGAGAGGTCTGCTTGCCTCTGGCTCCTGAAGGTGTTCACCACCACGCCTGACCAAATGAGGTAGAGGTTTTGGCTGTTCTAAAAAATTTAACCTTTCATTTGTTGTGCAAATGTGTACATACACTTTTTTGTTTGTTTGTTTGTTTCACTTTAG
Seq C2 exon
AATGGGAAATGCACCTTAAGACAAAAAGGACAGCACTTCAGCAGGATAGATTTTGGTCAGATATGTCAAATGGGATGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108:ENSMUST00000159569:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types