MmuINT0178962 @ mm9
Intron Retention
Gene
ENSMUSG00000046658 | Zfp316
Description
zinc finger protein 316 [Source:MGI Symbol;Acc:MGI:1860402]
Coordinates
chr5:144024472-144025101:-
Coord C1 exon
chr5:144024975-144025101
Coord A exon
chr5:144024586-144024974
Coord C2 exon
chr5:144024472-144024585
Length
389 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCGTCTGTCCTCCTGGGCAGGAT
3' ss Score
9.79
Exon sequences
Seq C1 exon
GGCCTGGTGACTTTTGAAGATGTGGCCGTGTACTTCTCTTTGGAGGAGTGGGAGAGGCTGGGTGTGGACCAGCGGGATCTGTACCGGGAAGTAATGCAGGAGAACTATGGGATCCTGGTCTCCTTGG
Seq A exon
GTAAGGAAGGCCCCCAAGGTAGTCTGCTGTGAGGGCTCAGAGGGCTCAGGGTTTTGGGGAAGTCAGCCCATTTTGGCCTCTGGGTGCAGGGGTTCTGAAGTAGGCAGAGCCATGCTGTGAAGCTGTTGGTCCACCGGCCTCCCAACTGTACAGCCCTGGAAGCCTCTGGGTAGGAGCGGAAAGTGTGGGTATCCTGATGGCGAAGGTGTATGGGGTGGGTGTGGAAGGAGAGCTGGGTATGGAAGCAAGGCTTGCAGGGGTGGACGGTAGGATCTCTAAGCATAGGTGGCGGGAAGGGCAGAGAGCAGAGGATTTGAGTGTGGACAGGGATGGCTTGGACCCCATTGGGGACAGCCACCCCTGCAGCTGCCGTCTGTCCTCCTGGGCAG
Seq C2 exon
GATACCCAATCCCTAAGCCAGATCTGATCTTCCACCTCGAACAAGGAGAAGAACCTTGGGTTGAAGATGGCCCCCATCCCGAGGAGGGAGATGTCGTCACTGGTGTCTACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046658-Zfp316:NM_017467:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGTGACTTTTGAAGATG
R:
CGTGTAGACACCAGTGACGAC
Band lengths:
240-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: