MmuINT0179073 @ mm9
Intron Retention
Gene
ENSMUSG00000020335 | Zfp354b
Description
zinc finger protein 354B [Source:MGI Symbol;Acc:MGI:1351476]
Coordinates
chr11:50742879-50744487:-
Coord C1 exon
chr11:50744403-50744487
Coord A exon
chr11:50743006-50744402
Coord C2 exon
chr11:50742879-50743005
Length
1397 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGAACGGCTTTCCCTCACAGGTG
3' ss Score
8.06
Exon sequences
Seq C1 exon
ATCGCATTTTTGGACACTGTACCCATCTTTGAGAAAAGCCCAGAAAGTGAGCATGGCTCCAGAGCAAAGGGAAGGGAAGTCTCAG
Seq A exon
GTGAGCGCATTGCCGTCTCAGTTCATGGCAGGAGTATTTTATATGGTTTTGGTTTTCCTTCCAGACTGAGGCTCTCCGCCCAGTAGACCCTTCACCAGGACTTGGTGCTCTTGGAGGAGCTGGTTGTCTAGGAAGCACACTGCACGCTCGCTCACAGTATATTGCGTTGCTGTTAGCTGATCCCGGTCTGTTGTGCTTACTACATTGACAGCGACATGCAGATGTCCGTTATCACTAGGGACACAGCTGGCGGAAGTCCTTTCTGGTCTGCTTCCCTCATGTTTATTTTTCTCAGCCCTCACCTGGATTGCCCATCTATTTCTTTTTGCCCTTAAGAATGCTTGCGGCGCTCCTCCATCCCGTGGTTCCCCTCCTATACTCTGTAGATCCTAGGTTTGGATTGTACCATTCTTGTGAAAACAACTACTCTTGACCTGCCATTTGGAGGAGCGGGAATATAGAGCTGCCCCCATCGAGGTGAGCTGCTGCGTGGACAGGGGAAAGCCATACTGCAGGGGACACAGTGTCAGGAGCCTCACTCTGAGAGCAAGGAGACGACTTATCAAGAAGCCATGAAGAGGGTTTCCTGGGATATTTGACAGAAAATTAGAAAGCACAGTGGGAGGCTCAAGACCGTTGATTTTTACCCTACCCCCTCTGTTACCATCTGTGGGCCTTAAATCAGTAAGTCTAACTTCTGTGTCTCAGTTCCCTTACCAATAAAATAAAAATAACAGCATCCCCTTGTAGGATTCTTGTTCTGGAGTGAGGACCGAAGCAGGAGATGGTGTGTGGGTCTTACCAGACCAGCTACACAGCTTTTTTTTTTTTTTTTTTTTTTACATTGTTGAAATGATTTCTACACATGCCTGTGTGCTGATTAGATCGGAAAGTCTTTAAGGCAAAGATTATCGTTTGTATTCTCTCCATAGTAAGTTATTTTTCCTACAGGCACTGCATGCATGTGAAAACGCAGAGTAAGGAATCTTGCTGGACATGGTGGTGCAGGGTTTTAATCCCAGTACCAGGGAGGCAGAGGCAGGTAGATCTCTGTGAGGTTGGGGCTAGTCTGGTCCACCATACCAAGTTCCAGGCCACTCAGAGCTTCATAGATTGTCTCAAAAACCAAGAACCCAAGAGACCTTTTGCCAGAAGAACTTCTAATTACCATGATGTACTTGCGCTATTGGCCATAATCCCTGTACAGAAAGCCAGGATCTGACTCACTGCTGTTGTTTGCGTGTCTGTCACCGGTTGAATTGATGACTAAATGGTAGATGACCTAGCCTCTTCAGAACCCTCAGTGACATCATTTCACGATGGCCTGTCCACCTTCCACACTGTCACCTCCCTCGTGCTGTATGAGGCTGCTGAGATGGAACGGCTTTCCCTCACAG
Seq C2 exon
GTGTCGGTGACGTTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020335-Zfp354b:NM_013744:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCATTTTTGGACACTGTACC
R:
GAGGCCAGGTTGCTGTAGTTC
Band lengths:
206-1603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: