MmuINT0179216 @ mm9
Intron Retention
Gene
ENSMUSG00000034538 | Zfp418
Description
zinc finger protein 418 [Source:MGI Symbol;Acc:MGI:2444763]
Coordinates
chr7:7124848-7127392:+
Coord C1 exon
chr7:7124848-7124886
Coord A exon
chr7:7124887-7127265
Coord C2 exon
chr7:7127266-7127392
Length
2379 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTTGTCTTCATCATAACAGGGC
3' ss Score
7.85
Exon sequences
Seq C1 exon
GTTCCCAGATCTACAGAAAAGGGTATGGTCTGTATACAG
Seq A exon
GTGAGTGTGGGGTGTTCTAGTAAGTTCACCAGTGTGGCCACACTTCTTGCCTCACGTTGGTAGTGGAATTCATTTTTGTGGGGGTTCTTAAGAATGGAATGTAACATTTAGCATGGAGGCATATCCCTGGAGTCTGAACACTAGAGAGGACCAAGGCACGTTCAAAGCCAGCCTGGGATACATGGTGAGACCCTAAGAAAGAATGAGTGATTGATAAGATAGCTCAGTTGGTAAAGGCACTTGCTACCAAGCCTGAGTACTTAAGTCAGTCCCCAGAACCTACATGATAAAGGGAGAGAACTGATTCCTGAAAATTGTGCCCTGCTTTTCTACTTGTACACTCACATACATATGCATACTGGGAGAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATACAAAAAGAGGGAGACTGAGATTTCAAAACCCAGTAGTATAGTGGGAATGTCAGCCGCTGGCTAGTCACACAGATCTACAACTCTGGGGAAAATTAAGCATGGAGACATCCTGATTGCTGAAGGCTGCTGTTTATCCTTGAATACGGGTGGATTAGGAAACAGAATCAGCTTTATTTTATTATTTTAATACTTTTAAAATGTTATCCCCCTTCCCAGTTTCCCCTCCACAAACCCCCTATCCTATCCCCCTCCTCTCTGCTTCTGTGAGGGAGCTCTCCCACCTCACTGCCTTAGCATTCACCTGCTCTGGGACATCAAGCCTCCATAGAACCAAGGATGCCATTGATGCCAAATAAGGCCATCCTCTGCTACATATCCAGCTGGAGTCATGGGTCCCTCCATATGTACTCTTTGATTGGTGGTTTAGTCCCTGGGAGCTCTAGGGTGTTAGGGAGTGTCCTGAAGGCTTTTTCTTAACTCCTTTGATCAGGTGATACTCCTTCCTGCCTCAGCCTCCTAAGTGCTTATACAATGAGAGTCTGCCATCATGGCCAAAAGGAAGCTGGTCTTGTTAGTAATACCATAAGCATAACACCATACACACACACACACACACACACACACACACACACACACACATCGCACCAACATTTAGGAAGGATTCTTGAAGTGTCTGAAAAGTGAAGAGTTTCATTCTAGGAATTGAGAGCGCAAAGTGTTCATCTGGGAGAATCAGTGTATCTGCAGAGGAGGCCCCTGTAGCTAGACTTTTTGGTAGAGCTTTGTTAGAGGAAACCTGTGACTGTTGAAGTGGCATTAAATGCCACATGTATGATGGTGGCTAACACTGGAGCAAGGAACAGAGTCAGCCAGCAAGGCATTAAGAGAGGATGGCAGCTGCCTCTGACACTAGGAAGCCTCAAAATTTGGGTAGTGATGGATCTTGCCTCCATATATGAAGCTTTCTCTAGATACCTCCTGCTAAGTAATGCAGGAGCCCAAGGAGATGCCTGTGGTATATGCTGTGGAGTTTGAGGTGGCTGTGGGAATGAGCTGTTATAAGAGAGGTGTGGACTAAGTGAAACACATAGAGATGGAAAATGTTAGCAGGCCCTGCGACTTGGATAACAGACACTTTCTTGGTTTTATGGAGGAACCCTAGGAAAATTGCAGAACAAAGTTGATTGATAAGCTTTCCAAAGTCTTTAAGTACATGGAGAGGGACATTTGAGTAGTGTTATCTTTAAATGTGTTTGGAATTGTCTTGGGTTCAGGGTGTCCCACCCAGACACACCCAGACACACCCAGACACACACACACACACACACACACACACACACACACACACACAGAGACACTTTCTTTGGTTAACAGGCATTTTGTACCCCTCCTACCATTGCAGTAGGACTCCGTGACTTGATTTGTGAGCAAAGAATCAGCTGTAATAGGGCCCTTGCTTTAGTGCTTTAGTGCATGAATGACTGTGGACTGGCTGGGATAAGAGTGGGTACCACAGCTTCTGCTCTTGGTAGTATAACAGGTACAGAAAGACCTACCACATGCAAAGGGAAATGGCTATATTTCAAAAAAAAATAAAAAATTACCACCTGTTGCTTAAAGCAAAAAGTCATTTAAAAAACAAACAAACAAACAAACAAAAAAACCAACAAAAAAACCCCCAAAAAGCCTCACTGTGGTTTTTATGTTCCATCTTCTCATTCCATGGCCTCAAAAGAAGTCTTGATGGCCCTTTATTGTCAGGTCCAAAATGCATAGCTACTCCTCATCCTTCTGTGGGTGCAGAGGGAGGATGTAGTGATCTGGGAATAGAGTAACAGGTGTTAGCCTTCGTGTGTTAAGCTTTTTATCATTTCAAGAGGAGAGTTAGTAAAGGATGGACGTGTGGGTGCATAAACTGGGAATCCGAAAGGAAGTTGATCATTGAGTGACTTGTCTTCATCATAACAG
Seq C2 exon
GGCTGTGTAACCTTTGAGGACGTGGCAGTTTACTTCTCCCAGGAAGAGTGGGAGCTCCTGGATGAATCTCAGAGGCTCCTGTATCTTGATGTGATGCTGGAGAATTTTACCCTTATAACCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034538-Zfp418:NM_146179:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: