MmuINT0179324 @ mm9
Intron Retention
Gene
ENSMUSG00000053600 | Zfp472
Description
zinc finger protein 472 [Source:MGI Symbol;Acc:MGI:2385049]
Coordinates
chr17:33102776-33112985:+
Coord C1 exon
chr17:33102776-33102874
Coord A exon
chr17:33102875-33112858
Coord C2 exon
chr17:33112859-33112985
Length
9984 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ATGTATGTGGATTCTTTTAGGAG
3' ss Score
6.39
Exon sequences
Seq C1 exon
AGCTGGAGGGAGGAGAGTTGTGCTTGAGCTTCCCGGTGCCTGTTCTGCCGACTGCCGCTCAGTAGGAAGAACGCCTGGATGCATCAGAAGCAGGAAATG
Seq A exon
GTGAGTGTGCCCTGGACTCTTGGAAGGTGGGCGGAGGGTTCTGACACTGCCACGGCTTTGCTGTAAGGTGGCGCCGGCTCCCCGACGTGTGCAGCAATTTGAGATGGACTTTGGGAGTGCCGTCAACCCGGGTGCACTTGAGTTGTATGCTCTGTTAGCGGAGTCCCGTCCTGTCCCTTCCCTGTGAAGCTGCTTCGTCCCTAGTTTCTAGTCCTCCCATGACGAGCCTGCGCCGCGAACCCGAGCCTCCGCTGACATTGCAGCTGCCAAGTTGGTGACGCCGCGTCCAGACTGCGGTGAAGGCACGTGGGTGGTGTGCACTGTTTTGCACTTTTTCATTTCCTTGTTCCCTGCTTTAGTTTTACACTGTGGTCATCCTGAAGAGAGGCTCGTGCTCGTGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCTTCTTTTTTAAAGTACTAGGGATGGAACCTCAGGTCTCATGCTAAGCGAACGCTTTACCATAGACCTGTAGACCTGTATCTCCATCCCTCATCCTGAGTTCACAGCTGGATTTGTTAGCTGTGATAGGCAAAATTCCCTATTTGTATGTACTGATTAATTAAGCTGATCATTTCTGAAGTAAAGGTTAGATTTTGGAGACCTTTTCCAAAGGAAAGTCTCGATAGCAGTGAAAAAGCCCAGGGCAGGGAGGGATTGTGTTGTTCTGTCCGTTTATACGGGATTTCACTGGGTACCATTGGCTGGTCTGGAAAGAGTTATGTAGACCAAACTAGTCTGGAACTCTAGATCCTCCACAGTGCTACGTGTGTTTCTGCTCATATGGGAGGGTATTCTGGGACTTGGAAGCCCAGGAGCCATACATACAGCTCTGAAGGGAAAAGGTGTCCCAATGAGGACATCCTCAAACACGGGAGCCCAGGAACCACACAGCTCTGAGAGGAAGCCTCCTCAGCAGTTCCCAGAGGAGGGTATCCCCAGCTGAGCTGAGGAGTTTAGGAGCTTACAGGCTTCAGCTGCCCTTTCTCTTCTCTTCTTTGCTTCTTTTCTTCTTAGCTTCTTCTGATGAGAGCCACTCCAGGCAGTAGATCTTATAAAGGAGACTTATTGGAGAGAAAAATGGAGAGGGATGGCTGCCCTCTGCTCCCAGAGCTGACTGACATGGGAGAATTGGACAAAGGGCAGGACTTGGATAGGATTTCTTAGAGAGTGGACAGAAATTTCCAGATTGAGGTGTGGTGTGAGTTCAAGTCCTGAGCTTGGGATTTCCTGTTAAGGGATTGGTGGGTTTTTTTCACCCTTTCCCCTGCATTGGGCCCATGGGTTAAGATGGGAAGTCCTTCCTGGCTTCAGGTTGCCTGGGCTGATGGGCCATCCTTGTGGAGCTGCTCCAGGAGGCTGGAGAGGAGGTGCTGCCACTGTGGACAGCTCCTGTGACAACTCCAGGCTGAGAAATTGTGGTTCGGCCATAGAGCCGATATTTTGACAACTCCTGTGCTGGCCTCTTACTGCAGCCTTAGGCAAGGTGGGAAAGAGGGGACTACACTGGGATTATAGGTGATTTCCACCCCCTCCGCCACCCACTGTGTATATATATATATTTTTTTGTTTAGCTAGCCTTAGGGTACTTCTTCAAATTTAGAATGCATAAGAGAGATTTCTTTAATCCCATCGGAGGTAGAGACCGGCCTATCTCAGAGTTCAGTCCCCTAGGGCTACACAGTGAGACCCTGTTACATATAACCAAAACAAACAAGCAAACAACAAATAAAAGCCAAACAGAACTCTTATCAGGATTATAGTTCTTGGGAAAATTTTTAATATTTTCATTTCCTTTCTAATTCGGGTAGTTGTTAGTTTTTCTAGAGAGTGTAATTTCTTTGTTGTTATTTTTTAGATTAAAAACATTTTTATGTATATAAATATGTTTGAGTGTATGCTGCCTGTGTGGGGGTACCTGCTGAGAGCAGAAATGGGTGTGGATCCTTGGAACTGGAGTATAGGCAGTTGTCAGTAGCTCTTGTGGATAATGGGAACTGAACCTGGGTCCTCTGGAAGGACAATATGTGCTCATAACTGCTAAGTCATCTTTCCAACCCTGGACAGTGTGAGTTTTGACCATTGAGAAAATCTGGGTTGGTCAGTCTGAGAGAGAAAGACATCTTTGTTTTTTTACCTGTTATTTCTTGTAGATGTGTTTAGATTGTTATTTTCTTGGTTTTATTTGCGATGTCATCTGTGCCTAGAAAATTGTCCATCTCTTATGTATTTCCAGGTTTTTGCAAATAGTTTTCAGAGATAGTCTTCTGCATTTTATTGGAACCTTTTGTAACCTCCCCAAGTCATCTATATCTTTTTATTAATTTATACCCTTTCTTTCTGTTGATATTGCTAGGTGCTTGCAAATCTTTTCTTTTTTCTTTTTCTATAAAACAGCTGTCTGGTTTGGTATATTCTTTTCATGACCTTTTCATACTTTCTTAATTTTATTATTTCTTCTTGTTGTATGACTTTGGCTTTGGCTTATTCTCATTTTTCTAAGGCCATGTGTTTGCATCATTATGTTATTTAAACTCTCTCTTTCTCACAGTTATGACCTTTCTTCCTATATTGTAATAGGTATATATCCCAAAGATCACAGCAATTTTTCCATTTATATTTATTCTAAGAATTTAAAAATTTACTTTTTTTTTCAGTGACTTACCGGATATTCAAGATGTTTTTCATTTTCCATTTATTGATTTTTCTTAAGTTTTTCTTTATATTTTTAGTGTTACTTCTTTGATTTATTTAATAAGATATAATGCATTATTTCTTTTTTTGGTATTCTAAAATGTGGTCTACTTTAGCGTGGGTTCTATGGACTTCTGAGAAGACTGTATTCTGTATCTCTTAGATGGTATGTTTTAGCTGTTATATCCATTTAATCTGTGGTGTAGTTTAACTGCTATGTATATTTGTAAATTTTTAGTTTGGATGTTGTAAGGATGAGAATAGACTACTGAATTTTCTTCTTACTACTGTATGAAGACATAGCTGACCTAGATCCATTAGTATTTTTGAAATTGAAAGTTTCAACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTATATATATCAGGTGTGTCTGGTGCCCTCAGAAGCCAGAAGATGCTGTTGGATCTTCTGAAACTGAAGGACATACAGATGGTGGTTAGTTACCATGTGGGATGCTAGGTACTGCACCTAGATCCTCAGCAAGCAAGTGCTTTTAACACATGAACCATCTCTCCAGATCTTGGATCTACTTTCTTTCTTTCTTTTTTTTTTTTTAAAGGGATTTATTTATTTATTATATGTAAGAACATTGTAGCTGTTTTCAGAAACACCAGAAGAGGACATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTGGCTGGGATTTGAACTCAGGACCTCGGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCTAGCCCCTACATCTTTCTTTCTTTTCTTTTTTCTTTTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTTCCCCCGCCCTGCTCCCCTACCCACCCACGCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAATGATGGCTGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCTCTTCAGCTCCTTGGGTGTTTTCTCTAGCTTCTCCATTGGGGCCCCTGTGTTCCAGCCTAAAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCATATGAGACAGCTATACCAGGGTCCATTCAGCAAAATCTTGCTGTCATATGCAATAGTATCTGTGTGTGGTGGCTGATTATGGGATGGATCTCCGGGTAGGGTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGTAACTCCTTTCATGGGTGTTTTGTTCCCTATTCTAAGGAGGAATGAAGTATCCACACTTTGGTCTTCATTCTTCTTGATTTTCTTGTGTTTTGCAAATTATATCTTGGGTATTCTAAGTTTCTAAGTCCCCTATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAATGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGGTCCCATTTGTCAATTCTTGATATTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTATTCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTGTTAATTTCAGTGTCTCTGGTTTTATGTGGAGATCTTTGATCCACTTAGACTCTAGCTTTGTACAAGGAGATAAGAATGGATGAATTCACATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGATTCATTTCTGGGTTTTCAATTCTATTCCATTGATTTACCTGTCTGTTGCTGTAACAGTACCGTGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTAATGTCAGGCATGGCAATTCCCCCAGAGGTTCTTTTATTGTTGAGAATAGTTTTTGCTATTCTAGGTTTTTTATTATTCCAGATGAATTTGCAAATTGCCCTTTCTAACTCAGTGAAGAATTGAGTTGGAATTTTAATGGGGATTGCATTGAATCTGTAGATTGCTTTCAGCAGGATAGCCATTTTTACTATATTAATCCTGCCGATCCATGAACATGGGAGTTCTTTCCATCTTCTGAGATCTTCGATTTCTTTCTTTAGAAACTTGAAGTTCTTATCATACAGATCTTTCACTTCCTTAGAGTCACACCAAGGTATTTTATATTATTTGTGACTGTTGTGAAGGGTGTTGTTTCCCTAATTTCTTGCTCATCCTATTTACCCTTTGTGTAGAGAAAGGCCACTGATATGTTTGAGTTAATTTTATATCCAGCTACTGCACTGAAGCTGTTTATCAGGTTTTGGAGTTCTCTGGTAGAATTTTTGGGGTCACTTACATATACTATCATATCATTTGCAAATAGTGATATTTTTACTTCTTCCTTTCCAATTTGTATCCCCTTCATCTCCTTTTGTTGTCGAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGGTAGGGAGAGAGTGGGCAGCCTTGTTTAGTCCCTGATTTTAGTGGGATTGCTTCGAGTTTCTCTCCATTGAGTTTGATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGATTAGGTATGGTCCTTGAATTCCTGATCTTTCCGAGACTTTTATCATGAAGGGGTGTTGGATCTTGTCGAATGCTTTCTCAGCACTGGATCTACTTTCTAATCCAATTAGCCAGTCTGCATGTGTTTATTAGAGAAGTGAGTCACACTTAAGGTCATTACTGAGAGGTTTGCTAAGTCCTGTCTTTTTTTTTTTTTTTTTTTTTTTCCAAAACAGGGATGTGCAGCTTTGTCCTAGAATTTGGTCTGCAGACCAGGCTGGCTTTGAACATACAGAGCGACCTCTGCCTCCTGTGTGCTAGGCTTAAAGGCATGTGCCACCACTACCCGGCAAGTCCTGTGACTTTTATTGGTTATTTTTCTGTTTGGTTGGATTATTGTTTTTTTGGGGTTTTTTTGTTTTTCTTTCTCTATTGGCCTTGAAGGTTTGCCTCTTAGTTTCCCCCTCCTCTTCTCCAGTGTCTCACTACATAGGTCTGGCTGTCCAGACCTCAGAACTCAGTATGTAGACCAGGCTATCCTCAAATTCACAGAGATCTTCCTGCCTGTGCTTTCCATGTGCTGGCATTAAAGGGGTGCACTACTATGCCTGGCTTAATTTTTTTTTTAAATAAACTTTATCATAACAAGCAATAAGTAAATAAATAAAATACATGCAAACAAATTAAAATATCACATGCCCAAATTAACCAGACCCAAAGTCATACAACTTAATGAACATATGTACAGTTAGGATCCGCATTTGGATGGAAGTTGTGGGACTTCACATTAAAATGTACATTTTCATATGCACTCATTCACCACCAAACCCAAAAGTCCATGGCAGAATCAGAAACACATTTAGGGCCGGGCAGTGGTGGCACACACCTTCAATCCCAGCACTTGGGAGGCAGAAGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAGAGTAAGTTACAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAGGAAAAAAAAGAAAAACACTTAGGGTTTTGTCGTCATTCACACCTGTCTAGTACCTGCACTCAGACCTTCCTCATTCCATTCATTTGGCCTTTCTTGTTCTCTTTTCTGTGTGTTATGCTGTACCCGTGGGAATATTTGTTTACACAGAAACATGTTACTGACTGCTTCAGTGCGGCCCATCAGCGTGTACTTTCCTGGTTTGGGGGGTTTGCCTTTATTGGTGAGTCAGTGTCTTCCTCTTAAAGCTTATACTACTACTTCATTACTTTGTGTTTTTGACATCTGTACTGTGTGTTCCTGAGTTGCTCTGTTTGAAGTTTTAAGTACCTTTGTGTTTGGATGTGTCTTGATTTGAATTTTTTTCTGCTTTAATTTCATTGAATAGATTCACTTGGCCTTTTTTTTAAATCTCCTCTCTTTCCCCATCTCGTGGAGTTTTAGTGTTAAGCCATCTCTTCAGCTCCCCACGCCTTTGTTTTTGTTTGTTTGTTTGTTTGTTTTTAATTTAGGTTTTGGCTCCTTGTCCAGTCCCAGGGTTCTTGGTTGTTGGGGTGATGTTAAGTTTTTGGTTTGTCTACTGATAATTTGTTTGTAGTGTTTTATTGATTGCAAGCTCCATCTAGTCTTTCTTCTGCTGATCTAGAGTGTTGTGTAGGCTGTCTGTTGTGTTCTTTGATTCATTGAGTTTTTCATTTTATGTTATTTCTTCTTCACAAAAATATTAAATATCTGAACCTTGCAAGGAGTAAAAGTGAAAGGATGAAGTTCCAAGTGATTTAAACCAGAAAGCAAACGGCCACAGCTGTGCCATTACCCTGGAAAAGATGTTCAAGAGAAGAGCAAGTATCAGAGAGGAGATGAAATTTTAATTATTTGTGCTATAAAAGTATTTATGAAAAGAATAGTGACTGCTACCCTTACCATCACTCAGTGTAATGATCAGCCTAATATGAAGCAGCTGGAGTCTTTGAAAGTATGAGAGTGAGCATAGCAGACAAAGGCATAGCATGATTTCAGAATAGGACTCCAGCATGAACTCACTAATGGAGTTTATCAAATGAAAACACTTCGGCCTAGCAATGGAAATGAATGAAGAGACAATTCGTAGAGTAGGAACAAACAGGCTATGTGACATCTGACAGGCAGTGATATCTTGATTATTAACTTAAAGAACTTAGTGGAGGGAGTATGCAACTGAAATCTGCATAAACAGGCAAATGAAATAAATACGCTTTTCAATTTCAGTAACCAATAAAAGCATGAAAATCTATTCAGGAGCTTTAGTTATTGTGAAAATACTAGAACCACATTGAGAATTAGCCTCAACCTTTTCATGGTATAGGTCATCAAGGAAACAGATGTAAACACGGATTAAAAAAAAAAATCTTACACATGGCTGATGTAATGTGAATTCATCTAGCAATATGGAATTTCATCAAAGAAGTAAAATTATAGTTAGCTGATGATCTAGCTATATGATTAGGAAATATAAAGGAAATGTTCACATGGGCATACAATAAAAACACCTTCATATCCAAATTTATGACCTCATAGTTTAGAATAGCCAAGTCAAAAAAAAAATAGCCAAATACTATTCAGAAAATAATTTACTTGGATTTTTTTATTGTGTTCTAAGTTCTTTTCACATACCACCATTACTCTCACTTCTTTTCCTTCTGAAGCATTTATTCCTAACAGGTCCCTCTCTTTGTTTGTGCCCTACTGAATTTAAGGAGCATTGCTTGAATGAACCTGGGTATATTTTTATATTTTGTTTTTGAGATAGGCTCTCACTGTATAGCTCTAGTAGGCCTGGAACTTGAGAGTTTTGCCTGCCTTTGCTTCCATCTTTTGGGATTAAATGTGTATGCCACCCTACCCAGCTGTTGGTCATCTGTTGATTTGTTTTTACTGGTGTGTAGGGAACTATAGCTCTGGACAAAATGATTCATTTCCGTTAGTGTTAGCAGCCACTAACAGTCAGTATCCTCAGAAAGGGGAATCGCCTCAGGAAGGGTGATGGGCATTATCCTGTGCCCGTTACCACAGCCTCTGTGAATTGCGGTATATTGCCTATGTTTGTCAAGAAGACCACATTTCACACCTCTCTTTGATGACCCATTTAGGCCTAAGCACTCACCAATCACTTGATCTCAGAACATTGACCAGCTCCGTAGTCTCTGCATTAACTATTAACTACTGCAAATAAATGTCCCCTCACCAAGACTGAAAGCAGTGCATATCTGTGGATAGACTTATACATATTTAGAGAACCATTTTGAAAGCATTTCAGTTTAGAAAAACAAAACTAATTAGTACCCCCTTTGGGCCTGTCACCTCCCTAAGCAATAGTTTAAAGTAACAGCCGTGTGTTCGTTCCTATGGAGAATCCCTGAAATCCAATCAGAAAGCGTTAGTTTCGGTTGCTGTGATAAAACGCCCTTATCAAAAGCAACATGGGGGAGGCGATGGTTTATTTTTCTTACACTTCCAGTTGGTCATTGAGGGAAGTCAGGGCAACAACCTGGAGGCGTGACCTGAAGCAGAGGCTGTGGAGGAATGCTCCTTACTGCTTTGTTCTCTGGCTCGCTTATCCTGCTTTCTTATACCATTCTGGACTACCTGCCTACAGTAGCATTACCCGTACTGAGCTGGGCCCTCCCACATCAATCATCATTCAATCATCATACAGGGTTGCTCACAGGCCAGTCTGGTAGAGGCATTTTCTCATTTGAATTTCCCTCGTCCCAAATGACCCTGTAGCTTTTATGAAGTCAATATAAAACTAGCAAGCACCTCAATTACCGTGTTACCACTGCACTTTTGGCACACGTTGCCTGGCAGGTTGGTATATTGATGTGATTTCTCCCTCAGCATAGAGGAAGCTTCTATTTCAGCTTGATTTTTTTTTCCCCCCCAGTCTTGGTTTTTGCTGCAGAATAGCAGAGTAGCCATATCATACAACAGCCTAACCGGATATCAGTGAGTAAAGTGATAGATTATGATGTATATGTTTATTAATTTGCATATGTAAATGTGTTATACCCAAATACACATATAAATACTATGGTGAATTGTACTATAAAGAAGAAAGGTACTGGGGCCTGGGGAGATAGCTCAAAGGTTAAGAGCGCCTATTCTAGAGAACCTAAGCTTGGTTTCCAGAACATATGCCCTGTAGCTCACAGCCTTCTGTAACTCCAGCTCAGGGAAAGACACACGTGTAGAATACTAACACATACATACATCACTAAGGAAATGTATCATGTTATTTTTAGTGAAATGTGTTGAACCCCAGCACCATCTTTATAACTACGCTAGAATAAGGAAGGATAAGAAGTGTATATTATACACTGCATGTGGAAAACACACTGAAAAGTAGAAGGGAAAAGGTGGAAGTAGAGGGGGCCAGGCAGACGTACAGAGACTATTTGAAGAGTAAAGCATATCGTAAACTATGCCCGAGACTATAGATCTCTTGTGTTTCCCACTATTCTTCCTGTAAATGTATGTGGATTCTTTTAG
Seq C2 exon
GAGCCAGTGACCTTTGAGGATGTGGCTGTGAACTTCACTCTAGGAGAGTGGACTATGTTGGATTCCAGTCAAAAGAAGCTCTACAGAGATGTGATGAAGGAGACCTTTTTGAACCTGATCTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053600-Zfp472:NM_153063:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: