MmuINT0179427 @ mm9
Intron Retention
Gene
ENSMUSG00000023882 | Zfp54
Description
zinc finger protein 54 [Source:MGI Symbol;Acc:MGI:99201]
Coordinates
chr17:21560191-21564792:+
Coord C1 exon
chr17:21560191-21560525
Coord A exon
chr17:21560526-21564700
Coord C2 exon
chr17:21564701-21564792
Length
4175 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
TTGACTCCTCCATATTAAAGGTC
3' ss Score
7
Exon sequences
Seq C1 exon
GAGGAAGTGTGTTGTGTGGAGGAAGTGTGTTGAATGGAGCTGGGATTAGAGGAGTGGCGTGATAGCTGGGACTGTTCTTTAGTGAACCTAGGTAAGTTGACTGAGGAGCCAAACCCAAAAGTGGCAAGGACGTCTTCCTCGAGGAACTCGCTGGCATGCACCGTGGAGAATCTTGTGATGCAGACCTGGAGTCAGAGGATACAAGAAGGGTTTCAAGGGGACGCAAAAAACTACCCTGAGCCTCAGGTGCCGCGCGGGGCATCCTGGGAGAGTCAGCAGGCAGCAGCCCAACCGGTGGAACCACAGCCCAGTGGGGGAGGGCTGTAACCTACCAG
Seq A exon
GTTAGAGGAGCTAAGGGGCTGGGAAAGGGAAGGAATCAGACAGGGGTGAGATATTTCCTCGGCTACTCATAAAAATGACAGCTCTCAAAATTCTGCTCTTCATGTCTTGCCCTTGCCCATAGATTTTAGACCATACTAAGTTGATGAATACTGATTTTTTTTCCATTTATTCTCTTGGCAAATTTTTCTTATAGAAGTACTCTAGTGGAGTATTTGAAACTATCTGTTAATATTGGCAAACGTGTTTGGTTTGGTTGTTGTTTTTGTTTTGTTCTTGTTATTTTGCTATGATAGAAAGGACAACGCTCCTGAAATTTACATTAGTCCACACTAATTTCTTTGTATACCTGGGAACTTGGCACCTACGGAGAGGTTTTAACTATCAGTAATGAAAGGAACATGTAAGGAATTTTTAAGAGCAAGGGCATCTTTGCAGTCAGGAGCAAAAGCAATACAACAAAGTCACACCACACAACAAACATCGTGCAAGAGATATATTGCAGATAAACAGAATGGCAGCTACTCTGAAAGGGAAGAGAGTTGGAAGGCTAGGCAGAGGGATGGGTGTTTATAGTGTCTTTGGAGCATGTGAAATGACGTACTGGAAAAGAACAGTGGGTCCTGAAGTATTGCTTGGTCATTAAAGCTGGAACAATGTAATCTGTTAACACTGAGTAATGAAGGGATTTCCAGGTTTTAAGGCCCTGGAGGCACTGAAATGACTAGCCTCCCCTCCTACCCCAGCATCATCCCCAGGTTTCTCTTAGGGCCATAACTGCCATTTCCAGCCCCTTGGGTCAGAAAGTGGCCAAGCTGCTGTCCTAAAGAGAAAGAGAGAGAGAGAGAAAAAAAAAGTCCATGATCAAGCTACAAAGGCTTCCATCATTTTCAGTTCATGATAAGTTCAGAACTTTATTAGTGTATATTATTCTCATTCCAATCATCCAGTTTCATTTCTACCCATAAGTTTTCAAGAAGCTGTGATTGGAAGTGAGGTTCACGCTAGACTAACTGAAAATGTTTTCTAAATATTTTTCAATATTCTGACACTGAATGGCATTTGGGGGATCATTGTACAGTCTTCAGTTTTGTTCCTCTTTATTGACTGAGCACAGTACTGTGCTAGGAATCCAAGTACAGGCTCACTGATCATCCAGATCAGCTCACCTGTGGAACAGAACACAGACCTGGAAGGTGGACAGGGAGGAGACAGTAGCTAAGGATCCAGGTATGTTGGGGGATTGGTCAAGGGAAGGCAAGGGGTTCAGGTAAATGTGGAAGTGGGCCATGAGATCAGTTTTGCCACATTCTGTTTCACTAGAAATAATTCTAGAGACTTCCACTGAGAAAAATCTCCTCAGGATTATCCTAATATAGAGATGAGAAGACTTTCTACAGAAGAATTGATACTAGGAGGCAATAAACTTTTACTTGATTGTACATGTGAGTGATGCTGTCCTTATTCCATACACATCACTGATCAGATCTTCAGAAATGGTTTTCGTTTCAGCAATTTTAATGTATTATAAAATGATGAAAATTAATCTCTAGATGTAGTGTTTAATGATTTTTGGAGCAAGAACAACAGGCACAGCTAACTGTTGAGCTATCTCTCCACCCCATTTTAAATGTTATTTATGTGAGTATAAATAATAGAAAATGGTATAAAACCATTCTAATCACTTTGATGTAGATGATGCAAAATCTTCAATTTACATAGGCATTTATGATTTTTAATAATTTTCTTTTAGTTATTGTTGTATGATTGTGTGAGTTCCTAAACATAAAAATACAGTCTACTCAGTCTGTATGTTTTCAGGGATGTATTGGAGAGCCACATGGTGGACTATCTCTGGGGAAGACTGTTTCTCCAATTCTCAGAATTCTTTAGTGTTTGACTAGAATCGAGGTCTAGTGATTTTTCTCCCTGCCTTATCAGCATGTCTCTTGGTGTTGCCCTTGTTCAGCTTATGTTTAGACAGTCATGTTTGTAAGATTTCAAGAATGTAGCTTTTCTGACATTTCTTTTTTTTAAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACTTTTGGGAGAGCAGTCGGGTACTCTTACCCACTGAGCCATCTCACCAGCCCCTTTTCTGACATTTCTAAGAGACACAGTCTTAGCACAAATATCCTGTTCCTCTTGCTGTTAAAATGCACTCTTCTGCTGCCATCCCTTCTCAGTGATCCCTAAACCTTAGATACTGGACTTGTGTTGTTTATGTGTAAGCTGTGGCTGAGCATCACAACTCTGCATTTTGACTGGTTGTGATTTTCTGTATAATCTCCATGTGTTCCAAAAAGACCTTTCCTTGATGAAAGATGAGAGACCATTTACATATGAAAATTATGATGAATATATAGAGTACTGCTATTTGGGATTATGCTGGCTTAGTAAATTATTGGTTGTAGCTTCTCCTCCAAGGTCCATGACTTGGTAAGCCCTGGGGAAAACTGTCTAGGTTTCCAGTACTAGGTGTGATTTCCCACTTATTGAGGTCTTAGGTCCGATTCGAAGCTGTTGGTTACTGCCAAGGTATGTGTGCCACTCTTGCATCCTTGCGATATAATGCAGTACAGATCATTGTTATGGTTCATTGGTGTCATTGCTGGGTAGGACTGTTGGTAAGCTCTCTCCTTTGGAAGCTTGCATGTTGCCTTCTAGTACCATGAAAGCTAGTCCCCAGGGAGGACCATTTAATGTCAGATCTAACTTGAGACCTGGATTCTGTATATGAATCTGATAGCATCTTTAACAATGGGGCCTCACTATCTACTGCTGGGAGAGAACCAAAGGCAAAATCAATAGCCTATAATGTTTTGGAAATCTCTTAAACAACTGTGACCAATAATCTAAAAGGAGCTTGGTATTGGTAGTTTTATTTTTTAAAAAAAATCTATGGCTCTTATAGGGACTATTATCAACCTAAATGGGAAGCTTTCATTTATATACTCAATATATGTGTATATACAGACAGGCACTTTTCATAGTTGGATTATATGATTCCTTCTTACTTTTCAGACATCCTTCGCTATTTTATCGTATTTTTTGTGTTTATATTTGTTTCTTAAATCCCTACTCCTGTTTTTCCTTCTTCCCCTTAATATCACTTTTCCCTATTATCGCTTGTCTATTGCTCCCCCATATCCCACCATGATCTGCTTTTATATTTCTTGTTACTGCAGTTACTTCAGGTTGAGAACTCACATCTGAAGGGTTGGAGCTAGGAACTTTCTATGAGGCAGAACATGCAATGTCGTTCTAGGTCTGTCTTAGCTCACTCAGTATAATCATTTCTAGGTCCATCCATTTATCTGAGAATCTGAGTTCAGTTTTCATAACAGCTATGTAATATTCCATAGTGTACATGTACCACATTTTCACTATCCATTTGTCAGTTGAAGGATATTTACGTTGTTTCCAGTTGTAGCTATCGTGACTATAGCAGCAGTGAACATGAGAGAGCATGTATCTGTAGAATAGAATGTATAGTTCTTTGAGCATATATCAAGGAGTCAACCATCTGGGTCATGTGCTAGACTTATTTAACTGGAGGATTTGTTTATTTAATTGAGGATCCTCCATGATGATTTCCAGAGGGGTTAGATTTTGATGCTCATAGGTTTTTTTTATGTTCTTCCTAGGTGGATTATTGGTAGAATTCTTCCTTCTCTGAGAGAATTGGTAATTTGCTTTCTTTTTTATGAGTGGCTATTTTGATTTGCCTTATGGATAATTCCTGTATATACTTTACCTGTAACTTTCTATGACCTGTTGCTACTATATCCTATGTACTGTGAAATCCAATTGTGTTAAATATACTTATGTCTCCTTAATTTTGAGAGAATATTTTCTGCATGCAGTATATGGTTGATAATGGTTTTCTCTTCACACTTTAAATGCCTTTCAATGCTCTCCTGGCTTTGGGATCACTTACCAGACACCGGGTAATATTCTGTTGCTTGGATCTCTTCATGTGGTACGACATTGTTCTTTATCCACATTCAGTACTAATTTTACTTCTCCTGTTTGACTCCTCCATATTAAAG
Seq C2 exon
GTCCACTTGTCATCTATTCATTATTCTTCAAAGAGAAATTCAAAGAAGAGAAACAACAAGAAATGGCTGATTCTTCAGTCAACTTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023882-Zfp54:NM_011760:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: