MmuINT0179473 @ mm9
Intron Retention
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30798862-30800208:+
Coord C1 exon
chr7:30798862-30798908
Coord A exon
chr7:30798909-30800084
Coord C2 exon
chr7:30800085-30800208
Length
1176 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GTGTCTGCATGTGGTTTCAGGAT
3' ss Score
8.33
Exon sequences
Seq C1 exon
CCGCAAGAGGAAGAATGAAGAGTTTTGCCTTTAAGGACATGGCCAAG
Seq A exon
GTAAGCCGCATTTCCACTTTGTTCATGGAAAAACTTCTCGGTTTCTCAATGCTGCTGAAAATCTTGGGAGACTCAGGTGGTGTGGAAAAGAGAAAGCCATGTTCGTGGAGTAGTTTTCCCACACCAGTCTAGGGAGGCTGCTTTGTACAAATAAGTCTACAACTTCCGTTTCCCAGGCTTTTGTTCATTAGAAGAACAAAGTCTTGGCAGTGAACCTGATCAGTTAGCAGAATAAGGTTATATCTGCCTAGTTTCTTTGTTGTCCCCTCTAGGGTCACTGTAGGGATGGCATTCTTGCTGAAAAGTTGTAACACCCTAGGGTGTCTGCCTGGCCTCTTCCGTGTACTTTTCTACAAGATGGAAAGCTTTGATTGCATTCTGTATGTACATTAGTAAAGAAGATTTCTGAAAAAAAATAATAATTGAACTGATCAAGAACATTAGTCACCCAGAGACACTCAGTGGTTACTGATTTTGGAGTCTTTTGTCTATGCATATGATTGGCCCCAGAAGTGTTTCCAGTGCAGGATGGCACTGACCAAAACCACCAGCTTAAGCACTTGCTGTGTCGCGGTGGCTTGAGGTTCTTCCCAATGTGATCTTATTCAATCCTAGTCACAACCCTGTGACACAGCTGTGACCATGTCATTGATTCTGCCATGTATGCTTTTAAAAATCCTTGACAATGACGTCTGTTGATGACATGCATCCTCAGCGTTCCCTGCCGCCTCCTCCAGACAGCCCCAGCCTGGTCTACAGAGTGAGTCCCAGGACAGCCAGGGTGACACAAGGAAACGAAAAACAAACAAACAAACAAAATTAAAGCACAGAGTTACAGCTAGGTTTAGAAAAGTGACCAGTTAGAAAAGTTTAATAAAGACAGACAGACAGACAGGCAGACACACACACATACACACACACACACACACACACACACGCACGTTCTGCTGTGGAACAGAGGATGCTGTACTTGCATGTACAATGACATTCCGTTGAGAAACACCATGTCATAGACTTGATGCAAAGGGCCAAGGAGAAGGCATGTTCAGAGCCCGCATGGGCACCTCTGTTCCCACACTGGCCTGCCTTTGTGGAAGGGTGCAGGTGTTTGGGGACTGTCTTCTCTGATGTCTTCTGTCTTAGTTTCTCACATGGCGTGTCTGCATGTGGTTTCAG
Seq C2 exon
GATCTGAGGTTCGAGGATGTGGTCATTTACTTCTCTCTGGAGGAGTGGGAGTGCTTGCGCCATTCCCACAGGAATCTGTACCGAGCTGTGATGTTGGATAACTACAGCAACCTGCTGTCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-Zfp568:NM_001167873:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: