MmuINT0179479 @ mm9
Intron Retention
Gene
ENSMUSG00000066721 | Zfp575
Description
zinc finger protein 575 [Source:MGI Symbol;Acc:MGI:2141921]
Coordinates
chr7:25371673-25372261:-
Coord C1 exon
chr7:25372177-25372261
Coord A exon
chr7:25371837-25372176
Coord C2 exon
chr7:25371673-25371836
Length
340 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GACTGGCCTTTTGATTTTAGGCC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTTTCCCTAATTCTCTGAGTCCCCAGTTCTATGCCAGAGATGCGATTTAGCGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
Seq A exon
GTAAGCCCCCCTTTCTACTAGAATCCCTTCCACTGTACCCAAAGCGCTTCTGGGACAGGGTGGCCAAGGGCACACCCACTGCGCTCAAAGACCAGCCCCTGGGCTTGGGTGGCCGGGCCACTGACTGCTCTTTTTGTATAGCCCCGCCCACTCCAGATTTAGCGGTCCCGCCCACTCTGAGATAGCCCCACCCCACCCAGTGAAAAGATTATCTCTTGGTTTTATTTTCATATCCCCTCCTAGTGTGTACTTAGGCTCCACCTTCCAGCCTTCTGCTCTTGAGTTAGGACTAGACTTAACCAACAGCCTGGTTCTAAACAGACTGGCCTTTTGATTTTAG
Seq C2 exon
GCCCGCACCCCTGTCTCCATGAACTTGTTAACCACTGGCGCCATCCTCGCCCCTTGCCCAGCTGCCCCTTGGTCCCTCTGCCAGCAAGATGCTGGGTGGAAGCGTGAAGTCCGAGGTCAGGGCCTCGGAACCTAGTCCCACCTGTCAGGACCCGGAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066721-Zfp575:NM_001033205:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTAATTCTCTGAGTCCCCA
R:
CTTTGGTCTCCGGGTCCTGA
Band lengths:
246-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: