Special

MmuINT0179487 @ mm9

Intron Retention

Gene
ENSMUSG00000030443 | Zfp583
Description
zinc finger protein 583 [Source:MGI Symbol;Acc:MGI:2682297]
Coordinates
chr7:6277055-6280918:-
Coord C1 exon
chr7:6280857-6280918
Coord A exon
chr7:6277182-6280856
Coord C2 exon
chr7:6277055-6277181
Length
3675 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATACATTTATATCATTTCAGAAT
3' ss Score
6.48
Exon sequences
Seq C1 exon
GACACCTCCCTGCTCCCAGAAACACAGCCATACATTCTTGAAGCTTTAACGCCATGTCCAAG
Seq A exon
GTAAGAAGCGTTTCTTTTTCCCTGGAATGCCACCTTATTTATCAGTCAGGCTAAACCACTTTGATTTCAGAAATTCAGCTGCCTGACAAAATCTCCTCTCTCCAGTGACTTGCTCTTGTTCTCCACTGCAACACAAGAGCTAGTCCCCCAAGACTAAGCTAAGAGCACCCTTTCCCCCGGCCAGCAAGGACGCAGTTCAGCCTCGCCTGTGGGTTCAGTGCTCTTAGGAACTCACTCTAAGAGGCAAAAATACATTTTTTTTGGTGGGATTATGTAAGCTCATATTGTGGGTATTAGAGGTGTAGATGTGTGTGGTAGCTTTTCTCTACAATCTCTGGTTTGAAAGGAAATAGGAGGGCTTTTGGGGGGTCCAGAGTTTGGGCATTTGGCAGAAACTCATGTTCAAGATGATTTTCAGAAATCCGATGTATCAAATTGGGGATGGTGCTGTTTTGTTTTCCAAGACAGGGTTTTTCTATGTAGCCCTGGCTGTCCTGGAACTCGATCTGTAGACCAAGCTGGCCTTGAACTCACAGAGATCTGTCTGCCTCTGCCTCCCAGATGCGTGCACTACGACCACCTAGCTCAAACCTTGATGGCTAAAGTGCATCTAGGCTCAGGCAGCGTTTTTCTTAGTCTGTCGGGAGCTTTGAAGAGTAATTGTTTATGAGAACAGTAATTTCTTCTTTTAGAGATAATCTGTTAGTAGCAGTGCACAGCTGATATACTGGGCAATCCCGCTAATTAATTAAATTGTTATGGGGAATGTATTGACATGGTGACTTACGTAGCCCAGGCTGGGGTTCAACTCATTCCAGCTAACCCTGATTTTGAACTCCCAGTCCTCCGACCTCTACCTTGGAAGTAAGAGGAAACACTTGAGCCTGTATTTTAAAATATATGTTAATTTTATTTTATGAGTATGGGTGTTTGTTTGCATGTATGTACAACACATGCTTGTATGTACATGCATGTATGTACAACACATGCATGCAGTGCTACAGAAGATCAGTAACGGGTGTCAGGTCCCCTAGAACGAGTGACAGATGATTGTGAGCTGCCATGTAGGTGCTGGGAACTGAACCTGTGTCTACTGCCACAGCAGCCGGTGTTCTTAACTACTGAGCCATATCTCCAGCTCATTGAGCCTGTGGTTTTTTTTTTAAAGATGTATTAGTTTATTTTATGTGTATGAGTGATCTCTTTTCATACAAACCAAAGGAGGGCATCAGATCCCATTACAGATGGTTCTGGGTCACCATGAGGTTGCTGGGAATTGACTCAGGACCTCTGTGAGAGCAGCCAGTGCTCTTAACTTCAAGCCATCTCTTCAGCCACCGAGCCTATATTTTTAAAACGTTGCAAAAATATTTCTACAATAACTAAAATAAATAGTATGAAATAGAGTCAAAAGGAAACATTTCAAAATGCATATATAATACCCAGAAACAAAATGCAGGTATGCAAAATGTGTGAGAATTGAAGATTTTTCCCATTGTGATAAATAACAATAGACATTGTCTTTTTTTTCATGCATTTGGTGTCTGATGGTTTAATTATATGTTAATATGCTTATGTGCATTACACCAGCAGGGAAAGAATAGAGATTGCTGTTCCCAAAGGCAGAGTACCACCACAGTCAGGTCTCTGGTTGTGTTTAAAGTAGGTTTTATGAAGATTTATGAGGTGGGTGGCATATTCATAGGTAAGATTACCTTTCCCCCTTTCAAGTATATCTATGTTTTAGAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGATAACATATATAACATGTATATGTATATGTGTATGAATGCACACACCACACACACACACACACACACACACACACACGCACGCACGCACGCGCGCACGCACGCGCGCACGTACACAGATGCTAAGACTGGCTGTACTTCCAAAAGCAGAGTCTGATTCCCAGCACCCACAAACATCTGTAATGTCGATTCTAGGGGATCTGATTCCCTTTTCTGGCCTCAATGGGCAACAGGCACACACATAACAAACAGACATACATGCAGACAAACACTCATACACATAAATAAATCACATAAGTAAGCTTTTAAAAATAATTATTGTCAATAAAGATTATATTTTAAAGTATTGTTTGTTATAAAGAGACTGTAATTGATTGGGTTTTGAAAGTCAAGCCTGACAATCTTTTAACTAGTACATTTTCATTAATGTTATTGCTTACAGGTGTATGTTTAAACCTAACAGTCTCCGGTTTGCTGATTTGTTTGGATACAACTAATTAATTACACATAATCTCCATAAATTCTTAAGTGTCTATGATCGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACCAACTCTCTTCCAGATGTCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTTACAACCATCTGTAATGGGATCTGATGCTCTCTTCTGGTGTGTGTGAAGACAGCTACAGTGTACTCATATAAATTAAATAAATCTGTTTTTTAAAGTGTCTATGATCATATGTATCCATTACTTTCTATATAGTACTCATTTTTCCTTCCCCAGTGTACCTGTTTTTTTTCAAGAGGAGTTCTTTGGCATTTAGTATGCATCCCCTGTTGCTGTACACTATTGATTTTAGTGTTACTTATCATATACTATGGTGCGTCTTTTCTCCGGCAGTAGACAGTTTATCAGAAGTTATATACTTCCTGTAAGAGAATACCGAGGTGAGCATGGCAATTACTTGACATGCATTTTTTTAGAATGTAAGGTACTGGCTGGTGATATCTGAAAGTGTTGCAGCTCTGAAGGGAAAGGTACCCTGATAATCAGGAGCCAAGAAATACCAGACTCACACCACACAACAAACCTCACACAAGAAATTTATTGGGAGACATACAGAGGGTGGCCACCTCTGCTCCAGTGAGAAGCAGCACAGAACTGAGCAGGAGACCAGCATTATGTAGGGCTTCTTGGTGGTTGCTGTTGGAGCTTTCTGGGGTGTCCTAGGATTGGTGGGATTTTGTGGTCAAGCCCAGGAATTGGTGATTTCTGTGACCTGATCTTGGACTTTTTTTTTTTTCCTATAGGGCAGAGTTTGGCCACTTGTGTTACCAGGTGCTGGAAACTGCCATTATGGCAGCTAGAATAGTGGTGGTGGTAGTGGGGTGGGGTGGTATTTGCACCTTGAGTGCAACGGAATGGTTTAGAGTGGCCATATCTGTAAGTCTAGCACTTGGGAGGCTGAGGCAGGAGAGGAGAGGGGAGGGGAGAGGAGAGGAAAACAAAGATAGACACATAATCTTAGCTCTTGGAAAGCTGAGGCAGAAGGGTTGTGAATTCAAGACAGCCCTGAGCCACATACTAAAGACAGCCTATGGCTGTCTTTAAAAGTTGAGTTTTTTGCTTCTACCAATGTATAGAGAGTTTAGCTACTGCTAACTTTTTTCTGTTGTGTTTTATTGTGTTGTTATTTGCTTGTTTGTCTGAGACAAGGCATTACAATGGAGCTTTGAACTCACTATGCAGCCCACACTGACCTGGAACTCTGGGCATCCTACCTCTGCCTCCCGAGTGCTGGGATTACAGGAATGTGCTGCCATGCCCAGCTTTAACTATTTAACCTAGGCCTGTTTGAGGAATTGAACCAGAATACATTTATATCATTTCAG
Seq C2 exon
AATTTGCTGACATTTGAGGATGTGTCTGTAAATTTCACTCAAGAGGAATGGCAGTGGCTGAGTGACACACAGAGAGATTTGTACAGGAAGGTGACATTGGAGAACTATAAGAGCCTGGTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030443-Zfp583:NM_001033249:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0135222=KRAB=WD(100=95.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000053935





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000053935f2728A
          









    
Other Skipping Isoforms:
ENSMUSP00000104200, ENSMUSP00000118249, ENSMUSP00000129551
  



Associated events






Conservation


Human
(hg38)
chr19:56407124-56413958 
HsaINT0187747
(ZNF583)
Human
(hg19)
chr19:56918493-56925327 
LOW PSI
HsaINT0187747
(ZNF583)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:63944827-63944876 
BtaINT0006071
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"