MmuINT0179540 @ mm9
Intron Retention
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:13065013-13065840:+
Coord C1 exon
chr7:13065013-13065095
Coord A exon
chr7:13065096-13065783
Coord C2 exon
chr7:13065784-13065840
Length
688 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
AATCTGATCCTTCTCTGTAGGTA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GCTGATACTTGCAGTGCTCCTGGGCAGGACCCTGGCTGGTTAATCCTCAGGAATGGCTGCCATCAACCCATGGCCCTCCTGGG
Seq A exon
GTGAGTCCAAATCTTGCTTTTTTTTTTTTTTTTTTTTTTTTCCTCTGCACCTTTCCCTACAGGAGGCTTACTGTAGGTCAGGGCTGAGAAAGGGCTGCCAGCTTTGGGAGATAATAGACAGTCTAGCTGTCTTGGTACAAAATTAGAACAGGGTAGTCGTTAAGAGGAAATGTATTCGTAAACAACAAGGTAAGTTTTGTATATTTGATAGTCAGCTTCTAAAACGGACCTCTATAAGATATTCTAGTAACTCATAGAACTCTTTTGAAGACAATATATACAGTCAAAATGTTTTTAGTTCTCTTGTGTTTTTCACCGTTAATACTGTATTTCACTTATTAATATTAATCTGTATTTTTAAAACAATGTTAATAATGATATGTGATAGTTTTATCTTTGTTTTCATCACCATAGACATCAAGGCAGTATCCTACTTAAAATTAAGAATTAGGTGGTGATACATCTTATCAGAAACGTATTCAGCCATTCAGAGGGTTCTGTTTTTCATTGCCTTGTTGTTAGATCATAGTCTACAGTCTACAGGTGTCTCCTATGCAGATCCAGCTTATGTTGGATTGTTTTTTAGATGCCCTTGGGTTCTGTGTAGGACTTTGTCATGCTCCTTTTTTCTTGTGTTACATTTAGTCACTGTTTTGTACCACAGTCATAATCTGATCCTTCTCTGTAG
Seq C2 exon
GTACCCTCATGGACCAGTCTTGGGGGATGGCAGCTCCTGAGCCTTCTGTCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-Zfp606:NM_026112:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: