MmuINT0179645 @ mm9
Intron Retention
Gene
ENSMUSG00000054967 | Zfp647
Description
zinc finger protein 647 [Source:MGI Symbol;Acc:MGI:3052806]
Coordinates
chr15:76740800-76747833:-
Coord C1 exon
chr15:76747720-76747833
Coord A exon
chr15:76742606-76747719
Coord C2 exon
chr15:76740800-76742605
Length
5114 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTTTCATCTTGTGCTTCAGAAT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GACTTCCAGGATCTAAGCCTGTTGTGATCTCCCAGCTGGAGCGAGGAGAAGACCCGTGGGTCCTGGATGGACAGGGAACCGAGCTGAGCCAGAGCCTGGGAAGTGACCACTCAG
Seq A exon
GTGAGTAGGGAGACCCGGTCCTGCTTTCACCGAAGGCGGAACTAATTCAGACTGAGCCACCGCTGGAAGAAGCTTCCACTTCCACTGGTCAGGGAAGGGTCAGTTGTTCTTCCTCTGACAGAATGTCACAGACCAGGAGGTAGTGGGCCAGGCAATAGCCTACAGAAGAAAATGTTCGGTAGTGGACGGACAGGGTGACAAACCTTGGTACAGAGGAGATAGGACAGGGTAGCTGAGCTGTGTAGACACCTGGGACTTTGTGGCTGCTCAGAAAGCCCATAGGTGTTATTAGTGGGAGGCTTGGGTTCTGACGGTTACATGGTGGTTTAGAAAGCAACAAGGCATCTTAGTATAGAAGGAGCGTTTCTCAGCCTGACACTCAAGGAGAAGGGATGAAGAAGTTCATCTCAGTTAGAGAAGAATTCATTTCCCCGAAGCCACGAGATATTGTTCTGAGGCTCCATGTGTGAAATAAAATGAAGTTATATATATATATATATATATATATATATATATATATATGAATGAATTGGAAGGGAAAGTATTGTTTGAAGTTTATGTGATCTTTTAACTTATAAAAAAAGAGATTGGTATTTATACGTGAATTTAGCAATAGGTAATAAAAATAATTTGTATTGCTATCAGCAATAAGCAAAGGTATTAATATTAAAATTATAACATTCATAATAGCACCAGAATGTTACTTGGGATGTGGAGAGATGGCTTAGTGGTGAAGAGCACTGGCTGCTCTTCCAGAGGACCCGGGTTCGATCCCCAGCACCCACCTGACAGCTCACAAGCTTCTGTCGCTCCAGTTTCGAGGGAACTTACGCCCGTAAGCCCCAGGCACACAGGCGGTGCACGGACGTACGTGCAGGCAGAGAACAATCATACACATAAAGTAAATAAAACTCTTTAAAAGTTATAGCAAGATGATGGACAGGGAAGACGGCATATGGATGGGCCCAACCAGAAAACTGTGCTCACAGTGGTGTTAGATGAAGAATCTCTGACAGCAACGACCGTCAGAATCTCAGGAAAACCACAGCCAAGCTGCTCTCCCTGGATGCGCCCCTCGAAGTGGGAAGGGATAACATTGTGCTGGCTGATTGGCTTCAGGGTTTCAGTGTAGCCATTTCTCCCTTCAGAATTATCCCTACCTAGGCCAGCCAGTGGTGGCACACGCTTCAATCCCAGTGGTTGGGAGGCAGGACAAGAGGATCTCTGTGAGTTTTTGGCCAGCCTGGTCTACCGAGTGAGATGTAGAACAGCCAAGGCTTGTTACAGAGAGAAACCCTTCCTTCAAAACAAAGAGGAAAAAAACTAAAACATTATTCCAAAGTAAAAGTCTTACCTAACAAAATTTAGCATGGGTGCCAGGGTGTGGTGGTGCACACCTTTAATGCCAGCACGAGGCAGAGGCAGACGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCATGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAACAACAACAAAAAAACAACAACAACAACAAAAAAAAAAAACTTAGCATGATTCACAGTGTTGTGGCATAAAAAGGAGACCAGTGCTCATTTGCAGTTATTGGAAAAGCATTGCATGGAATCCAGCACTCATCCCTGATTAAAGTGTGGCAAACCAGGCATGGGAAAGATCTTGTTCAACCTAAGACAAAGCATCTAGGAAATAAATACCTACACCCAACTAAGTTCTTTCTGCTGAGTGGTACGTTAGAAGTTCTACCAGACAATAAAGAGTGAAGTAAAACTATTTGCAAGAATTGTGGTCAGCTATGTACACAATTCTGTGAGATCTACCTAAAAGCTATCAGAATCATGCATTTAGCAAAACTGCAGAATATAAGGTCAGGATAGAAAAAAGTGTATTTCCGCATAACAGAGATAAGCTATCCAGCAATGGATTTTTTTCAAGCACAGACATGGACACAAGAGCCCTGGTGATGACAGATTTGCCTTCTTTCCTTAGTGACTTCCAACCTTGGCTCTTTTGACAAGAAGGGGTCAGGCAAGTCCTTGTCCTTCCCACTACTAGACCTAACTCCAAGGCAGTCCCCTGGTCATGATCACCACTGGGAGGATCCACGGGAGAGCCCTGGCACCCATGGCTCCTTAAGCTGTCTCTTCACCCTCCTAAGTCCTTTCTTCCTTGCCTCTGCCTTCTGTCTCCCTTCAGCTACCAAGGCCCTGTTGGATTTGAGAAAAGGGGGTCGTATAGAGCCTGTGATATTTTTTTTCCCAATTTGAAGAACATAAGTGAGGGTTTTTCCCCCTCCAGCTTCCTATCTCCTGAAGAAAACAAACTAATATAATAGGCAATAATAGAATACTGATATTTACACAATATATAGTAAAAGGCCAAGGTATTCCAGATACTCAGCTATCAAGGTTGCCATACTGAGATTCATACTTCTTGGTGTTGGTTCGTAAACATCTCAGTTGGATTAACAGGTAGCTCTTGGTGGGGTGGGCTGGTGATGTGCACAAGGGCTTAGATGCTGATGTAGAAAAGGAAGAATTAAAAGAGAGGTTTGGTCTAGCATGGAGGAGTCAAGTCCCATAGAGGTCTGGCGAACTCCAGGTTAACCCCCGAGCAACAGCTGACTGGCTTCATGTGGAGCGGCAGACTGTCTAGTGGAGCAAGTTAATTTAGGCCTGTGGTGGATTTGGGTTGACTGCCTGGAGCCCTCAATGTTATTCTGAATGTCTGTCTGAAGAGGGTTCCCCATCCCTACATCCTGTTTCTCAGAGGGAGCTTTGCTGAGCTCTCGGATGTCTGAGCTGCTGCCATCTTCTGACAAGAACTGTTAGTATTTAGTATGTCTGTCTGGCAGAGTAACCACCACTCCTTGGATATTACTGACCTGGCAGAGCAAGTCAAACATGGTTTGGTTTTTTTTTAATGCCGTTGTCAAAACCTTTCTCCAAACACTTCAGTCATAAACTACCCCATGATTATTGCTCTCCGTCATAGGAAGTCCTTTTGCATTGTTCCGGTCTTTCATTTCAGGTCTACTCATTGAGTTTTTGAGGAGACCCATTACATAGCAAGTTCTGAACCAGAATAAAGCTTCTAGCTTAGAGATGTGTAGCTCAGTAGTGACGTCATTGCTTACCACATACAGTATTCCAGCTTCAGCCACGAGCACCACAGCCCCACAACAAAGGATGACTTACACCTAAAGCTTCTTTTTCTTACCAGAGGCTATTACAACACACACACACACACACGCACACGCACACACACGAGTTAATAAGAAATGCAAATTTCATTTATAGATAAAACACAATTGGACAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAACTCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCAGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTTGGACAATGTATTTTATAATCAGCAAAAGTATACAGCCAAATACTGGACTCCAGAATGAAGCAGACTTCTTTATGCCAGGCTTAAGAAGTAAAGGACCGGGACTTGAGAGATAGCTCAGCAGTTAAAGAGAACTAGTTGCTCTTCCAAAGGACCAGGGTTCAGTTCCCACCACCTATATGGCAGCTCACAGCTACCTGTAACTCCAGCTCGAATCCAGGGGATTCAATACCTCTCACAGAGACATACATGCAGGGCAAAACGCCTGTGTACATAAAATAAAAATAAATAGATGTTTAAAAAAAAGAAAAAAGTAAGAAGTGAACGTCTGTCATTGTCTCCCTCATATTGGGGACCAGTACATAACATATCAACTTTAATTTAAAAAGTAAGAAATCTCTTTTTCTGCCTTCTCTGGGGCTTCCTGTCATAGAATATCAACCAAGTATGACAACCCATTCAGGGAAGTCCACAGACAAGACCCTGGAGACAGTGGTTAGGGCTTTAGGGTAAGCTGGCATTCTGAGCCCAGCCAGTAGGTTGTAGGCGGCTATAGGATGCACAGGAGCTTCTAGCACTGGTGGGGTGAGCCACCATCCTCTGCCACGTGGCATTGTCCTCTTAGCCCCTGCTAGGCCTTGTGTTTGAAGGACCTCTCCACACTATGGCTCAGTGTCGCTGTCTCCACATAAAGTCTTGAAGTAAAGACACCTTTAAACTGAAGATATGAAACATGGCTATTCCCAGTGCTCACATACAGACATGGTCTGCCTTAGAGCCTGTCTCTCCATTCCAGAAAGCCTTCCTTCCTGTTCACACTGCCACCTTCCAGATCGTCTCCAACCTAAATGTGGCACCAGGTTCCCATGATCTGTGCCTTTAAGTTATCCACCCTACCACCTGCTACACAGTGCATTCTCCACGTTGAACTGTCTGCCACAGAGGTGACTGTCAGCATCGATATAGGTATAGGGAGCCACTGGTTCCAGGATAGAATCCTCTGACTTGCTCGGAAGCTTCAGGCTTCCCCTACCAGCCCCAGGTCTAGCTTTACTGCTCATGTGCTGATACCTACAGCTGATGGAGCCCAGTCATAATTTCGGGGGACACTAGGATGTGCTCCCACTATCGTGTGCATTCTGTGCAGAGCAGACAAGCTGATGCCTTCCCCTTCCTCTATTGGTTTTGATTTATTGAAAGATATTCCCTTTGGATCTCACATGGGAGACTGTGAAGCAAAGCCAGCATTAAGATTGTACTCAGCAGTTTTGTTAAGCATTAACCTGTTGTTGTTTGGTTTGCTTTATTCCAGACAGGGTTTCTCTGCATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTTGGACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCAGCGGGTTATTGTTTTTTAAAGCAGCCCTTGTAGGTAGCCTAGCCTGGCACGGAATTCACAGTCCTCTCGCCTCAGCCTCTCAAAAGTGCTGGGATTATCAGCATAGGGCACCCACCACCCCAACCAGTGCTAACCTTTTCATCTTGTGCTTCAG
Seq C2 exon
AATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATGTGCCACCATTAATCTCAGACGAAGCATCAGCGACGCTGACGGAAACACCGCTGAGGAAGGTTGCTGAAGAACGTTACAAAACAGAACCGAAGGTCTGCCCCAGTCCAAAGCCCATTGGCCCCCAGAATGCCCACGGGTTGAACCCTAGTGTACCCGTTGCCCGACCCCAGACGGCTCCCAGTGTTGAGAGACCCTATATCTGCATTGAGTGTGGAAAGTGCTTTGGTCGGAGCTCCCATCTCCTTCAGCATCAGCGAATACACACTGGCGAGAAGCCCTACGTATGCCATGTATGCGGAAAGGCTTTCAGCCAGAGTTCCGTCCTGAGCAAGCACAGGCGGATCCACACGGGCGAGAAGCCCTACGAGTGTAACGAATGTGGGAAAGCCTTTCGCGTGAGTTCCGACCTTGCCCAGCACCACAAGATCCACACCGGAGAGAAGCCTCACGAGTGTCTGGAATGTGGGAAGGCGTTCACCCAGCTCTCCCACCTCATCCAACATCAGCGGATCCACACGGGGGAGCGGCCCTACGTGTGTCCCTTGTGTGGGAAAGCCTTCAACCACAGCACCGTCCTGCGGAGCCACCAGAGGGTGCACACTGGGGAGAAGCCTCACGGGTGCAGCGAGTGTGGGAAGACCTTCAGCGTGAAGAGGACGCTGCTGCAGCACCAGCGGGTGCACACCGGGGAGAAGCCCTACACGTGCAGCGAGTGCGGGAAGGCCTTCAGCGACCGCTCCGTGCTCATCCAACATCACAACGTACACACTGGGGAGAAGCCGTACGAGTGCAGCGAGTGCGGCAAGACCTTTAGCCACCGCTCCACCCTGATGAATCACGAGAGGATTCACACGCAGGAGAAGCCCTACGCGTGCTACGAGTGCGGGAAGGCCTTTGTCCAGCACTCGCATCTCATCCAGCATCAGAGAGTCCACACGGGAGAGAAACCCTACGTGTGTGGCGAGTGTGGCCATGCTTTCAGCGCACGCCGGTCCCTGATCCAGCATGAGCGAATCCACACAGGCGAGAAACCCTTTCAGTGCACAGAGTGTGGCAAAGCCTTCAGCCTGAAAGCAACTCTGATCGTGCACCTGAGGACCCACACGGGCGAGAAACCCTATGAGTGCAATAGCTGCGGCAAGGCGTTCAGCCAGTACTCGGTGCTCATCCAACACCAGAGGATCCACACCGGAGAGAAACCCTATGAGTGTGGCGAGTGCGGACGGGCCTTCAACCAGCACGGCCACCTGATCCAACATCAGAAAGTACACAAGAAGCTGTGACCCATGGCTGTCAGAAGCCCGCACTTAGAACATGCACAAGACCTAAACAGCCTTCCTCCAGGAGGGAGTTCTGTTCCATGTGCAGAATCGTCGTTCCCTTGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTGTTAAATTTATTTTCCTCAACATCTTGGAAGTTAAACTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACCTTTGTCTATTTGACATGAATTAGTTTATTGAAGCAACTGAAAAGCTATAAAGCTTAGGGACTATTCACATTTCAAATGAAGTTCCTTTTACACAGCTTCATGACGTTCCTAAATGTATCTGATCATTCTAATATTGTGCTTAAATTTAGAATGTTGGACCATTTTCGGTATCCTTTTAAAACACTTAAGTGCTATGTTGATAAAGTAATATTAAAAAAAAAAAAAGATCTTGGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054967-Zfp647:NM_001168276:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: