MmuINT0179702 @ mm9
Intron Retention
Gene
ENSMUSG00000058291 | Zfp68
Description
zinc finger protein 68 [Source:MGI Symbol;Acc:MGI:1344427]
Coordinates
chr5:139057698-139058395:-
Coord C1 exon
chr5:139058283-139058395
Coord A exon
chr5:139057794-139058282
Coord C2 exon
chr5:139057698-139057793
Length
489 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CAGTCTCCTCTACTCTGGAGGTC
3' ss Score
-5.17
Exon sequences
Seq C1 exon
ATCCCTGCTGTCTGAATGGAGGACCACAGTAGGCCACGGGAGGAGGAGAATCAAGATGCTGCAGTTGACAGTCAGGTGACCCTCTGAAGCTCATCTGCCTCTTCAACCATCAG
Seq A exon
GTAAGTGCACATACCAAAAAGAGCCCACCTGATCCTAGCCTAAATTACTGACCAGCCCAATCATATTGTATTTAAAAAATTTTGAAGGGGCTTGTTACCTAGTGTAGATAATTATCACCCCCTACGATAGACAGGATTCCAAACTTTAATGACTCTTTGTTAATATTGGCAAAGCAGTAGGTACTTTATAGGTAGTGGTTTCCTCTAACTGAAAGATGAGTCACATGGAAAAAATGTAGACATGTATACGTAGGATTGGTGTTCAACTCACAGTACCTGTTAGGCTGGCTTTATTAATTTACGGGTTGGTGACTCTGCTGTTACTTAGGGCCCCAAAGGCAGCCCCTCCTGTACAATGGAAGGCACTGGGTTGAGGAATCAGGCAGATGAACAGTAGGGGGCAAGTTTTCCCAGTCTCGCTAGGGCCTTTTACTCTGAAGCTCGCCATCTTGGGATGCGTCCCTAGGCTCAGTCTCCTCTACTCTGGAG
Seq C2 exon
GTCTAGGTGGCTGTGCTGTAGACTCTGTTACCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCCATGTCCTGGAAGCCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058291-Zfp68:NM_013844:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGTCTGAATGGAGGA
R:
AGCGTCCTCCCTATGGAACTC
Band lengths:
184-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: