MmuINT0179813 @ mm9
Intron Retention
Gene
ENSMUSG00000054381 | Zfp747
Description
zinc finger protein 747 [Source:MGI Symbol;Acc:MGI:2443581]
Coordinates
chr7:134518903-134519564:-
Coord C1 exon
chr7:134519157-134519564
Coord A exon
chr7:134519017-134519156
Coord C2 exon
chr7:134518903-134519016
Length
140 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TTTGCTATCTTTCCCTACAGACG
3' ss Score
11.14
Exon sequences
Seq C1 exon
AGGGAGCGTAGTTTTGAGACGCCGCGCCCAAGTCCACATTTTTACTCGGTCTTCCGGAAATCTCCGCTGTGCTCCTATCAGTTTTCACTTTTTCCCTACGTTAAGGTGCACACGGACCTGGTTCCTGTCCTTTTTCAGCCCTGGTACCCGAAAACGGACACGTTGGACTGGGCAGGCAATCCCAGGAGTGCGGGGCTGACCCAGGGACTGTGCGGGGAGTCTACATGGCGCAGGTGATGGCCCCGGGAAGGGCCTCGGTACCGCCTGTGTTCTGTAAACCTGGGACTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGAGGTATCTGCGGCCGGCGCAGAGAGCCCTGTACCGAGAGGTGATGCGCGAGACCTACGGTCTCCTGACCTATCTCG
Seq A exon
GTGAGAACCTTCCTGGCCGCCGTGGTCGCGATGCCTGTGACACCGTGGGTCCTGCGTGGCAGCAGAGAGACCTGGGCACGGGCGGTCGGAACCAACTGGGTCGTCCTCCTGACTAGTGGGTTTGCTATCTTTCCCTACAG
Seq C2 exon
ACGTCGGATGCGCCAAACCAGCGCTCATCAGCTGGGTGGAGGAAGAGTCCGAAGTGTGGGGACCCGGTGCCCAGGATCCAGAGGTGGCCATGTGCAGGACAGAAGTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054381-Zfp747:NM_175560:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=66.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACATGGCGCAGGTGATG
R:
ACTTCGGACTCTTCCTCCACC
Band lengths:
245-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: