MmuINT0179858 @ mm9
Intron Retention
Gene
ENSMUSG00000063047 | Zfp780b
Description
zinc finger protein 780B [Source:MGI Symbol;Acc:MGI:2444764]
Coordinates
chr7:28761759-28764176:-
Coord C1 exon
chr7:28764109-28764176
Coord A exon
chr7:28761853-28764108
Coord C2 exon
chr7:28761759-28761852
Length
2256 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
CGTCTCTCCCACCACCACAGTGC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GCTCCCTTGAAAAGTCAGGTTTTTCTCGTAGGTGGAAGAAATCGCTCTATGGCCTACGTCCTCACAGA
Seq A exon
GTAAGATCGGAGCCAGCATGCTGGGTGTGGGTGTGGGATGGATGTTGATATTTGTGTGAGTGTGTAGGGGCGGTGATGTGTGTGTCTGTTTCTCTGTATGTATACGCACCTTGAGCACTCTGCATCTCCTGTGTCACTATGCTTGTAGCTTTCTGCTCCTGCTTTCTCTTGCAGGCACAGGGGCTGAAGCAAGGAAAGATCAGGTGCAGAGTCTGAAGGGAAGCTTCCTTTGAGGTACATGAGTAGCTGAGGCCGGAAGTGCCTCCGAGGGGCCCCTAGGGGGATAAGATCCCTAGGTTTCCCTGAGCTGTAGCAATGCGAGTGTTGCGGGAAGGGAGGGAAAGTGCTCATTGAGGATGCTCTCAGATCTAGTTTGGGATCTCAGGCTTCCTTGGGCTCCCCACAGGCTCCCCATTTCGGCCATTATTCCAAAGGAGGGCTAGAGAAGCATGAGATCTTTATTGCTACTCAGCTAAGACTCAAGGGCGAAGTTTGTGCTTTCTCTCCGTGTGAGAAACGAGGCTTTAGGTTTAGACTATAGAATTGTCAGTAAATGAAGGAGTAACAGACAAACTGATAGCTCCAACTTTGTGGCTCTTACATTGTTCGTTCTCCTCCCAATTAGTATTCTCACTATTGTTTCAGTGATCCTTGATATCTCTCAATAATCAGACCTTTCCCCTAGACTTTATAGATAAGAATCTCCAGAGGTTAACCTTAGGAATCTCAAACTCAAACCAATTCCTATCCATGGCATCACATAGCAGATGGACTTTGATCTTTATAGACCTTCCTTTCAAAGCAGGGGGACTTCAGGGGTGCTGGTGCTGCTTGTATTTAATGCTAAATACTGGCTCCCAAGATCTGGTGTCCCCCCCCCCCCACCCTTCGCCATGAGCAGATCCTCACATACTCCAAGTGATGCTATGTGAACTTTGCTCCCCAGCTTAAAACCTGAGTTTAAATAAAACTAGCCACAGCCAGTTCCTGAGAGGAATAGAGAGAGGTAGAGTTTGAGTAACTGAGCTGTGGGTCTCAAGTAGGCACCACCAGGGGAGGAGAGAGAACAGAGGCAGAGCACAGGGGAGGAAAAGACTAGAGAACAGGAGGTCTCCAAGAGCTGGACCAACCGTTCCTGACAGAGTGATATGCCTCCCGGGGACACCAGACGGCTGGAGCAGAAGTAGCCCTGGAAGTTTGAAACAGCAAGGATTTGGGAAGTGCAGTCGAGCCAGTCGCCAGACTGTCATTTAGAGATATAGATTAGGGTCATCCCGCAGTAATTGCACAGAACCTAATAAATAAATATGGTAGTTTGAGTCTCATTCACTTAAGGTTAGATGGGATGTGTTTAATAGGTGTTCTGTACAGGGGAAAATGTAGGTGGTAGACGATTTCTGTTCACTCTTGAGAACTTTGGGAGTGGAAAAGTGATAGCACTGAATTTGGCATCTTTGAGAGCTAGTGATTTTCTGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATGGGTAATGTTGGCCAGGTCCAGATGAGCAATGCCATGGCTGATAGTGGGTGTGGATCTGTGGTATCGGGTTGGAGTCTTGGTTCTGTTCCCTCAGGCTCTCCAGGCCTGTCAGGAACCTTAGGATGCCTGTGGTGAAGCCTGTTAGTGCAGTGCCACCATATCCTAAGGGCCTGGTGTGCTTTAGTTGTTCTCTGTGAGGCCATCTTGGGTTCATTCCCCTCAGTGTTCTGCAGGACAAGGGAGTGTGAGAAACAATGCGATTGCTGGTGGATGTTTAAGAAAGCGGCTCAAAAAGAAAAGCTAGGCTTCAATCTTGGAATTTGGGAGGCAGAAGCAGGAGATCCCTGTGACTTGCGTAGCAGCTTGATCCACAGGACGAGCTCTGGGCTGGCTGGACTACATGGTGACACCCTGTCTCAAAACAACAAGAACACAAACTGTGTATTAATGTAAAGCAGAACTTTCTCAATTTTCAGATGATTTGTTTGTATTGTGTACAGTGTGATAATTTGGAGACTTTGTGTGCATCGGAACGACTGAATTGCCATTTTTGTAATGAGTGTACTTCCTGTCTATGCTCCTTAGTCTTTACAAACTATTAATCACAGTCACCATGTCTCATGGTGCATCTCTGGACTTCTGCTGCGTAGCTGAAGTGTTGTCGTCTCTATATGATCAGCATCTTCCCAACTCTTCCTTATGGTTCTTCGTCTCTCCCACCACCACAG
Seq C2 exon
TGCTGCACATCCAACCTCTGCCATTCAAACCGCATTGTCCAGCGTTTCACTGTTCCAATGAGACGACAGGGTCAGATCCCACGTGAGTGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063047-Zfp780b:NM_001081021:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: