MmuINT0179941 @ mm9
Intron Retention
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:112230257-112233427:+
Coord C1 exon
chr8:112230257-112230319
Coord A exon
chr8:112230320-112233310
Coord C2 exon
chr8:112233311-112233427
Length
2991 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
TTATTTTCTTATTATTGCAGGTC
3' ss Score
10.37
Exon sequences
Seq C1 exon
CTTCACATCACTCGGATTCGGGCGACTTTACTTTGCTTCGTGGGAACCTCATCAGAGCTGGAG
Seq A exon
GTGGGAGTGCACCCTCTTTTCTTTAAGGCTGGAAAAGGGCGCGCGCACACACACACGCACATCTGTAGTGTGTGTGCCCTGGAAGCTGCATCCTAACACCTGTGAGAGCAGAGGCAGGATGAGGGGGTGGGGGCCAGTGCATCCTTCCCAAGGACTCTTGACTGTGGCTCTATAGATGACAAAAACAAAAACCCCTACTCCCTTTAAAAGTCGCATCCCTTGTAGGTCGATCCTCAGTTTCCCGTTCTTCCCAGGTTCCTCCCTGAGCAGAAGATACTCAGGCGGCTCGCTATCCAATTACATTCCGAGCTTAAGTTTCACAATTGGGCAGCGCTGAAAGCAAAAGGGACCAAGTGACCTTTTGTACTTATGGGGTCTTGTTTTAAGAGGGTTACAACCTATAAAACTAACCTCAGATATTGTGCAGTTTGGGTCAGGAGTGGCCTCCCCGTGCCATTTGTCTGTCTCCTTACTTATTTTCCATGGTTTCCCCCCCTCCTCTGGACTTTTTCTTTCTAGTGGGTTTTTGAATTCTTGTGCTTTGGCTTTGTTTTGTGCTAAGGGAGGGTGTGTGTTTATTTTGCCTGGATCCCTCAGGTGTGAAGTCCCAGGAGGGACCATCTGGTCAGTTCCCCACTGGGCCACTAGGAGGCTGATGAGAGGCAGTGGTTCAGCTGTGGCTGCAGGTTTCCTCTCTGTGCCTTGTAGCTTTCTTACTGAACCAGTGTCTTGCCAGGATGATCTAAATAGAGCCTGGCACTCCTTCAAACAGACTTTATTACCTCAGTCGCAGAGCTTCGGTTCCTGGTCCTTATGGGGGTAAATGGAGATGAGATATCATTTGTTTTCTGTTACATGGTAGAGAAGTATAGAAAGATTGGCAGTCTGCATCTCATTCAGCTTTCAACTTTGGGAGTCCCCAGACACAGAGAAAGACCTAACGTGTGATATTCAGTCAGAGCCTATATTAAAATGGGTAGGGAGGGCTGGGTGTGGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACTCTATCTCGAAAAATTAAAAAAAAAAAAAAAGTAGGGAGAATAAACCAGGCGTAGTAATACCTCTGATCCCATTGGTCAGAAGGCTGAGGCTGGGGAGTCATTGAATCAAGGGGTTTGAATTCTTGTACCTTAAGACTCAATCTCCAAAAAAGAGTAGAGGCAGGGGAAAGGAGTGACTACCCCCTACAACTGGGGGTGTAGCTTAGTCAGTAGTGTGCTTGCCCACTATGCACAAAGACCTACCTAGCGTACACAGAATTTTAGATTCAGTCCCCAGCACCATGGAAGGCTGGGTATGGAGGCAGGTACTGCACCTGCCTGTACTGTGTTGAGACAGGAATATCAGAAGCTCAAGATCACTGTTGGCTCTATATCCCGTTCAAGATGAGTTAGGATGCATGAGACTCTCCAAGAAAAAGAGAACCAGAGAATACATCCCCTTTTATTAGATGTCAGGACGCTGCTCTCTAAAATTGTTCTTTCTGTTGTACATATTAGGAGTTATTTTCCTTTTTTTAATTGAAGGTCTGAAAAGAACTGTGTTTGGTATGCAGCTATGATAGAAGACTGCCTGAAAGCTGCTTCCTTGCCACTTCCTGTGGAGGCCTGTCTTTGCCATTTGCGGTTTCTTTCTTCTTTTGGTAAGGGGAGGCAGGATCTGATTACAGGTCTGAGGGCCTTCTAGCTACATAGAGGAGTAGGTTGGCATTATCAGGTGAGCTTCCTTAACTGGAGTGCACAGTACATCTAGCAGTTTGTTTTAAAGCGGTGAACTATATATTTCTATATGTGAGCCCAGTTTAAGACAGCGAGAACTAAAAAGAACCAGGGAGTGACTAAACCCACATCCCTAACTTAGGTAGAAAACAGAATTTCACCTTTTCCATTTACATTGTTCACTCTGCTGTGTTTGTTTTGTGGTGTTGGGAATCGAACCCAGGGTCTGATGCATGCTAGGCAGGCACTCTGCCAATATATCTCATCCCTAGTCCTCACTCTGTCTTGTAGAGAAAAGGCCACAGCTTCTGCAACTAACCCACTTCAGAGTCTCTTACATTGCTTATGGCTGAGAACCAGTGTTGTGGTTAACAAGGAACCTCCAGGTTTGAGAATTTGCCTGCCCGTCTATCAGATGGGCAGCTGCACATCTCTGCTGCTCCTCTTGTATAGGGCGCTTCGCCCTTTATTCCTCACTGGTCTCTTGCTACACAGCAAAATTGAGAAGAGGCTAGATTATGACTTTTGACCTCTTCAGACCCATCTGAGCAGGGCCAGCTGGAGTTGTACATTAGGAGACTGAATTAGTACTCCACCATGTGAGAGGCATCTACTTTTCTGCAGAGAGCGTGTCTTAAGTGGTGGAAGTTTGATTTGCTCTTGTATCATCATGCCTCGGCCTTATTGCAGATAAGTGATACCCTTGCTGCTTCTAAGCATCGTTCCTTAGAAAACTTTCTAGAGATACAGACTCCAGGTCTTGACTTCCAGTTGCACATGTGCCAGGTCAGCCACTACAGGTCATTGTTTGTTGTCTTTTTGCTTTCTTTCACATCCGTGGGAGCAATCCCTTTACCCACAGTACTTCTAACCTTGATTGCCCGGATTTGCATCCTTTTCTATCCAGTGCTCTTGACTTCGACCACTTAGTAGTAGTCTGAATCCCAAAGACAGCTTTATAGAAGAAGTCTCATAAGTAGTCGCCTCTCGAGTTTCTTGGTCCTTGACTTTGAGTTAGACATTTAGTTACCTTTTTCATTTCATTAGTTTAGTTATTTATATCTAGTGAGTTTTATATGCTCAAGAAGTATTTTTTAAGATCCTTAAATGTTCTAATTTTATAATTTCTGGGAAGAATAACAGGCTAACAATATTTTATTTTATTTTATTTTATTTTCTTATTATTGCAG
Seq C2 exon
GTCAGCACCGTACGAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGGAAGAACGGAGCTTGGATATCAGGGAAACATGTCCCGTAGGAAACAGACAAACCCAAATAAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-Zfp821:NR_030773:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: