MmuINT0179971 @ mm9
Intron Retention
Gene
ENSMUSG00000046185 | Zfp84
Description
zinc finger protein 84 [Source:MGI Symbol;Acc:MGI:107780]
Coordinates
chr7:30553571-30556422:+
Coord C1 exon
chr7:30553571-30553714
Coord A exon
chr7:30553715-30556357
Coord C2 exon
chr7:30556358-30556422
Length
2643 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTCCTTCTTCCATTCTGCAGTTT
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCTCAGCCACATGGCGGAAGTGGCTGGAAAGAGGTTGTTCCGGATCATCTCAGTGCCCTACCCGACCTAACCCGGTACTGTCCTGGTCGGTATTCGCTGGTCGTCCGAGTTCGAAGCCGTGAGATCGCAGTTTATACTTTTGAA
Seq A exon
GTGAGTCTGCCCTTGGTTTTAAGTGCTTTGTGTAAATACAGTCCTTAAGGCCTGTATTTGTTGGTCGCTGGCTGCAGGCCGGCTCTAGGGGACCCACCCGGTTTCCGGGATGGCGCTAGAGGCTTAAAGAGGGACTAAGGCGGCGGGAGTGTGACTGCATGGGCGAAAAGGTTTTTGGAGGATGTGGATTGTACAGGAGGGTGAGAGAGAGAGAGTGCGCGAAGTCAGCAGAACGTGGGTAGTAGGTGGTTACCAGATCCTCTAGTCTTGCAACGCAAAGTCGGGGGCGGGAGGTGCGGGACACCATTTATGTCAAGTTTATTTGAAAATTTGGGGGGAGGGGGGAGAAAGCTAAATAGTAGAGACGGTAAGGATTTCTGTGTTCAAGATAGATCAGTTTACCAATCAGCATGACTTTTAACTGTAGTTAGGAGTTAGATATGGTGACCCACATCTATAATTTCAGCACTCGAGCTGCGGAAGCTGGAAGTCAGTGACTTTGAGGACAGCCGTGGGAACATAGTGAGTTCCAGGCTACCGGGACCCACATAGTGAAATCCTGTCTCAGAAACGGATGAGTGTATAGAAATTGTATTTGAAAAAACGTAATTACTGTGGGTTCCTACTTTTGTGTCACACCCTCCGAGTAGCCATTTAGCCTTGTTTAGGGAACTCTTAGAAAATCTTAGCCTCTGTTGACTACCACTAGAGAAGTCAGAATTTGAAGTTCATGATTCTGGGTGATCCACTTCAGGTTCTAAAAAGACAACTTCCTCAGCTCTAGGCTTTTCTGTCAAGAAGCAGACATAGTGAGCACACGGAGTCTCCGTTGTACCCCATCTTCACCCTGTCCAGTTTATAGTTACAAAACTAGTCCTCGGTGTGGTGGGTTTAGAAGGTGGGGGCTTTTTGAAGGTAATTAAATGGGAGTAGTGCCCTGGCTCCCTGGAGCTACCTGCCTTCTCTAGGTGAGAGTGCAGTCCAGAGACTCCATCTGGGGACCGGGGAAATCGGTTTTCACTAGACACCTAATTTGTCAGTGCCACCACAACAGAGAAATAAGTTTGTTATTTATAAGCTAGTCTCTGGTATTTTGTTATAGCAGCTTAAGTGGGCTAATGGACTTTAATACTGCACCTGGCCAGTTCCTGCAGAAATTATTTGAAGTTCCTGAAATGTACTTTGTTTTTTTGTTTACGGTTTCCAGAGAGATCAAGTTCCTTTTTTTTTTTTTGGCTTGGTATGGAGGAATCCACAGAAACGCCTTTCTTCATGACATGAGGAACTCTTCCTACTGTCCTAGTAAAAGGGAGTGTGGGGTGAGATAGAATTGGTTAGTCCTGGGGTGAGGTGCATGTGGAGGTTTTGAAGATGATTGAACCTGTTCATGGTAACACCGAAGAGTGAGTAGCCTAGAGGCACGGCTTTGAACTTTGGACAGAATTTCATTTTATTCATCTGTCTAGTGTCTAGATAGATGGCTCGGTGGTTAAGAGCCGTGGCTACTCTTCAGAGAGTCTGGGTTCAGTCCCTAGTACCCACACTCATAGCTGTCCATAGCTCCAGTTCCAGCAGATACAGTCCCCTCTTTGTGACCCCTCAGGGCACCAGGCATGCACGTGGTACACAGACACACGTGCAGGTGAAACACCCATAAGCATAAAATAAGTAAAGCTTTTTCAAAAACAATTCTGAGCATAAACTCTCAGACAAAAGTTTGGAGAAGCTCAGGCTGCCTGCAGAAAAAAAGAAAAAACAGCAGGCATTTTACCGGGTTCTCGAAGAGACCTAGGCCATCAATTGTGGACATAGCGTTTTTTAAAATTAAAGGCTGGTCATGGTGGCGCACACCTTTAATCCTAGCACTCAGCACACAGAGGCAGGCAGATCTCTGTGAGTTTGAGGATAACCTGGCCTACATATCGAGTTTCAGGACAGCCAGAGCTACAGGGTGAGACCCTATCCCAAAAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGGAGGGAGGGAAGGAAGGAGAAAGGAAAAGAAAAGAAAACAGAAAAGAAAGTAGCCAGGTGTATAATACACATTTCAAATTCCAGGACTTGGGAGGCAGAGGCAAGTGGGCCTTTGCATTGGAGACTAGCCTGGTGTACTTAGTAAAACACCATCTTTGAAAAAGAAAAATCTCTTTATGTTTATAAGAAGGTTTTGCCATGTATGCTTACAGATGAATGGCTTCTATCCTTGAGATAAGGGGATATGAGGAAGGTTTATTCCTCACCCTATTTAATAAGGTAGGAAGGAAACTTCCTGGGTGGGTCGCAGGCCTTACAAACTGAAGGAATGAGGGTCTGCCATGATCCCTGTGAGTGTCTCTCAGGAGCATTTCAGTTGTCATTATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTTAGTCTATGTAGCAGCCCTGGCTAGCCCAGAACTCTTTATGTGGATACCGTGCTGGCCTTGAACTCCTACAGACTTCCTTGCCACATGAATAGGAAATGCAGCTCACACTCATCTGTATATGCAGCCTGAGGGCCTGGGAAAATGGGTCATGGGATGTTTCTCCCAATTCCACCTTCCTTCTTCCATTCTGCAG
Seq C2 exon
TTTGTCCAGAGTGCCCGGAAGAGCTGAGAAGCATGGCCGTTGTGGACGTCAGCACCGTGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046185-Zfp84:NM_023750:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: