MmuINT0179972 @ mm9
Intron Retention
Gene
ENSMUSG00000046185 | Zfp84
Description
zinc finger protein 84 [Source:MGI Symbol;Acc:MGI:107780]
Coordinates
chr7:30556358-30560483:+
Coord C1 exon
chr7:30556358-30556422
Coord A exon
chr7:30556423-30560356
Coord C2 exon
chr7:30560357-30560483
Length
3934 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACCTCATGCGTTCATTTCAGGAG
3' ss Score
9.45
Exon sequences
Seq C1 exon
TTTGTCCAGAGTGCCCGGAAGAGCTGAGAAGCATGGCCGTTGTGGACGTCAGCACCGTGTTTAAG
Seq A exon
GTGAGGTGAATTTCTCCTGCCAGCTCTCTTCTGGTTGCTAATTCCTGAAATGGACTTGCACCCCCATTGTCATGGTAACCATGGAAGGTCTGAGCTTTGCCAGCATAATTCTTTCTCCGGTGAACTATAAGGGACTGTCTGGTTGTTCTGTTCTTTTCTCTTCTTTTCTCTTCTCTTCTTTTTTTTTTTCTTTCTCTCTTCCTCTCTTTCCTCCTCCTCCTCCTCCTTCTTCTTCTTTTTCTCCTTCTCCTTCTTCTTTTTAATAATTTTAAATCTTACTTTATGTGCATTGGTATGAGGGTGTCAAATCCCCTAGATCTGGAGTTAGAGACAGTTGTAAGCTGCCATGTTGGTGCTGGGAATTGAACCCCCGTCCTTTGAAAGAACAGCCAGTGCTCTTAACCACTAAGCCATCTCTTTCCAGCCACTGTTTTTCTTTTTTTTTTTTAATTCAAGCATCTTCCAGGCCATGTAAGGAACCCCAGTTCCTAAGTGTTCATGAGTTTACTTCATTTTCCTATTCCTTACTTTCATGATCTGAAAGTAGAAGAAGTAATAGCATTTACTTTAGATTAGTTTTAACTAAATTGATGTGTGTAACATGTTGAGGGCCAGCTTCGTTCAACACAGCAGGGGCTGAAGAGGAGGGGTGAAGTGACAGGACACATGGACATGGGAATCTTTTGATAATTCAGACAGGTTCTCTTTGTTTTTAGTGGGGTCCAGGAGTCACCCCACAAACTGCAAAAACACTGATCTCAGTCAGACAGGGATAGTTTTTTGAGCGCACACCCTAAGACTGACCAATCAAGGCCATTGCTCAGAATTCGGGGGGCTGAGGCTATGACCCCAAACATTCTTCTGTATCAGCTTATAAAGGCTAAAGCCACAAAAACCACAATGAGCTCATAAGTAGGTGCTGGAAGTGCCACCTGATGGTCGGCCCTGACTGAGGCCAGTTTATGCATAGCAGTTCAAATTGACCTTTAAGTTGATGGGTCCCAAGTGAAGCCTATAGTTGTGAAATTTCCTAAGATTAACAAACCTCATAACCTACAGAACATAACAGGGTATATGGTCAGCATGACCCTGCTCTGAGTCAAGTTATTTTTCTGTGTCAGTGACAGGCAGGCATGTTTTACAGCAGCAATGTGAAATAGCTGGCAGGAGCAAAATGGCTGCAGCTCTGCTGGCGGGGTAGACCTCAGTAGTTTTTCTTTTAAGCTTATATCCCCCAGCAAAGACTTTCAGGCAATGTATAAGTTGCAATGTGGCTACATTCTATTTTTCTTCAAGTGAATGATTACAGTGAGTACAAGTAAAAAGCCAGTCTGTTTCTCAGCACTTTTTACACGAATAAACATTTTACATAGTACAGGTGAAAACCAATTGATCTGCAAGGACCCACATACACTCATGTCTAAGTAACTTGTTATAGATTAACAACGTGTAAGCAAGGTGTTCTCAGCCAGTTCTCTTACCGGCAAGCTGCATTTTGTGGTTGCAAAGAAAGGCTCGATCATTTTTATCATTTATCTTTGGATCCATCATTTAATTGTTTATCACAAAAAGTAATCTTATATAAAATCTTAATCATAAATCTAAACTTTTATATAAAAAAACAATCATTTTCCTTTAACTTTTTTCTAAGCCCTCAGGGTGCACCCTACACATTAAATTTTTTTACTAAATCATAGGATCAGAAAGCCGAGGGCATAAATGGCTACAAGAAATTAACCATTACCCTTAATCACCCACCCAGCTTGATCAAGAAAGGCACCTCAGCTAGTAATAACCAGGCTTACTCAACTTTCAAAAATGAACCTTTCTGAACTTTAAATTCTTGCCCAAAATTTTCTACATCAAAGCAACTAACACAAACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCTCGGCTGGCATTGCTGGTATTGCCTTGACTAATCCTCACACCTACTTGCAGAGGTATGCTAGTACCACAGGGAGGAGGGGACAGATGCCAAAGGGAGCAGGGAGTCAACTGTCCGTCTTGCTTTTAGTTCTCCTACAGGCAGTGCTTTTTTTATTTTCTAAATGCCTCTGTGTCCCTTCTCCCCAGGAGTATGCCCCTTGCTATTTTATGTCTCCCTATTACTATTTTAATCATAACCAAAGTGCTTCCACTTGAGCGTGTCAAGTTCGGAAAACAGGTGGCCTCAGCAGCAAATGGCTTCATCCTTCCGGGCAGCTGCAGCATTTACACCAAGACAATTACATTCTCTAGCTCTGAGCCTCTCGAAGGGCCCCAGTGCAGTGCTGGATGCCTTCTACCCTCGCCTGCAATGCCCCATCTGTGGGTTTGAGTTTGTTCTTGTTTTTCTTACTTGAGACTGAGTGTCGTTGTGTAGCCCAGGCGTCCTGGTTAGTATTTATGCCAATCTGGCACAAGGTAGACTCGTCAGTAAGAAGGGGGCCTCAGTTGAGAAAATGCCTCCATAAGGTTAGAATGTAGACAAGCCAGCAGGGCATTTTTTAAATTAGTGATCAATGGGGGAAGGCCCAGCCCACTGTGGGCAAGGCCATCTCTGGGCTGGTGGTCCTGCGTTCTACAAGAAAGGAGTCTGAGCAGGCCATGGGAAGCAAGCCACTAAGCATCGCACCTCCATGGCGTCTGTATCAGCTCCTGCCCCGGCTTCCCTCAGTGATGCACAGATACCTGGAAGCACCGGGAGTACACACCCTCTTTCCCAAGGGGCTTTGGTTTTGATGTTCCATCACAGTAATATGTAAAATGGCTAGGTATTTAGAACAGTAACCAAATCTCTCAACTCCCTGTCAGCCCTCCTCCCAGTTTCCAGCCCAGCCTCTTCAGATGTTTCTCCCAGCCATTCCTCCCTCAGTTCCCCAACTGTGTGCTTCAACAGTCTCTTCTGCCTGTTCTCTCAATACAAGCATCTCCAAACTATAACAACTGTTCTAGCCTATCTGCTCAGCTCAGTCTCTGAACATCTTCTCCACCAATTGTCTCCTCACTCTGCTAGCCCCATTCCTTTTTTCTCTGCCTCAGCTGGCTTTTTGTATAACCTATCCTGTTCCCAGAAATCTGAGAGGCAACCAACCCTGAAGGTCATGAAGTCAAGCAGTTTTAACAACAAAAAATTCTTAAAGGGCCAGTTGACTAGCAACTGGAGATCCTTTAAAGGGCCAAGTGCGCAAGATAAATTACACTACAGTAATATGAACCCTAATTAAGACCCCGGGCTAGCCCTGAATTTCTGGCTGTGCCCCCCAGTGCTAGCTAGAGTCACGAGAATGAGCCACTTGGCTGGCTAGACTGGAGCGAGTCTGTGGTTGAATTTGCAGGATGGAGAGAAGCAGTTATCCTCCAGCTTGTGAATTTACTCCCAAAAAAAGGCAAATTAGGAAAGAGAAATTTGCCAAGGACAAAGTAGCATTTGTGTCATCCTTGTGGGAGCCTAGACACAGGCTTGATGTGAGACAGCATGTTGGGAGTGTGGCCAACAAGGGACAATTGGCAAATGCCTTTTCTGCTGGAGTTTTTGTTGGGAGAACCTGCTATGGCTACATCTCATTTACATTACTGACTCTTTGGCCTCCTAGAAGTCAAGCTGGAACAGGTCAAGGTCTCAGGCATACAGTTAAAAAACAAACAAACAAACAAACAACCAGATAAACCCACCTCATCAGGCTGGAAATCAAGGGCTCAGAAGTGATTTCTCAGGGGCCAAAGGCCACTTCCTTGAAATGTTCAGTTTCCCTGTGCTGGAAAGGGGATATGCCTTGCCCTGGCACCCCTTGAAGAAAGAGCTTTAATGTTTCCCTGAAGTCTTCCCTGCTGTGTGTGTTACCTCATGCGTTCATTTCAG
Seq C2 exon
GAGTTGGTGGTGTTCAGGGACGTGGCTGTGGAGTTCTGTAAGGAGGAGTGGGAGTGTCTGGGCCCTGAGCAGAGGTCGCTATACAGAGATGTGATGCTGGAGAACTACAGCAACTTTGTGTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046185-Zfp84:NM_023750:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: