MmuINT0180009 @ mm9
Intron Retention
Gene
ENSMUSG00000057254 | Zfp870
Description
zinc finger protein 870 [Source:MGI Symbol;Acc:MGI:3029586]
Coordinates
chr17:33022902-33028548:-
Coord C1 exon
chr17:33028386-33028548
Coord A exon
chr17:33023029-33028385
Coord C2 exon
chr17:33022902-33023028
Length
5357 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
ATATATGTGTGTGCTTTTAGGAG
3' ss Score
8.93
Exon sequences
Seq C1 exon
CTGACCGAGGTCTGTTTCCTTAAACCCCCTCCCCAGCCCCCCAAATTAGGCATGTTTGTGTTATTTGGAAGTATGTCCTAGATGCCAGGCCTAGATATCAGAGTCGCCTTCACTGACAGCAGGAGCCGCAGGAGCACACCAGGACACTCCGGGGCTGGAAATG
Seq A exon
GTACGTTCGGCCTGTGACTTAGATGTGGGCAGGATGCTGCGGCAGCAGACGGAGACCGCAATGGGAGCAGGTCTTGCAAGACAGCTGAGTCTGCAGCGGAGTCTCATCTGGCTCCGCTGGGTCTTGCCGCTCCGATTCCGCTGGGTGGAGCTGGTCCATCAGACAGAGCGGTGGTCTCTTCCTCTCTGAGCGCTCAGCGCTGCAGCGTCTGGGGTCAGCTGGGCTTCTCCACCAAGGTCTCGGGAGGATCCTGAGGAGCCAACTCTGGGAGTTGGATTGGGACTCTTCTACGGGGGATGAAGGTGGAGCTGCGTGGATGATGAAGGTTAGGACACGAGTCCTATAACTGCTTCGTCCTCCCCTGAAAATCTCGACACACCCTATGCAGTGTCTCAGGGCGCAGCTACCCAGAGGACTTTGTGATTCTCAGTGTTGAGAGAGAGAGATGGGGTGGGGGGTGCCGGGGTGTGTGTGTGCGGGGGAGGGGGGTTAGACATATTGGAGCAGCGAGTGGCCCCATCCTTTCTGGAATAAATGCCCATAGTGCAGTGACTCTCAACCTTCCTAATGTTCATTTTGTGATCCCATCCATAAAATTACCTTTGTTGCTCCTTTATAACTGCAATTCTGCTACCGTTATGAACCGTAATGTAAACATCTGATATGCAAGATATCTAACATACAACCCTTGAGGCTGGTACTGGTCCTGGACTCACAGATCTGCCTAGTTCTGCTCTCCAGTGCTGGGATGAAAGATGTGCACTTCCACACCTAGTGATTCCAGTTTGAATCCCTAACATCAACCAGCAGATCACACGGGGACATTTCACACAACCAGAGACAACACAGGTTACAAATGGCTAGGAAATAGTTAAAGAGCCTGCAGAATCCGTCTGTCCTGAAGACACAGGTAGAGAGCTGAGGTAGGTGAGGGGGGAGTCTCCAGGGGACCAGCTAAGGCTTGGCAGTGCAGGTACGTAGATGCCAAATGCCTCTTGGGAGGACAGGCTATTGGATGGTGACTTTCAGGTGGGCTGAATATTTTGCCACGAAGAAACTGCTGTGGTGAGGGACATGGTGATCCAGGAGTTGACAATTTTGCTGGCTTTTGACAGCTGACCCTGCCACTCTCTGGTTTTAGTCTCAGGTAAGAGGGTTCCATCTGTTGTGGACCAAAAGCCCCTGTGTCTGGTGTTTCTGGTATGATCTGGTATGAGTGTTGCTACTTATTGACACAGTTAATGTCTCTTGGTGTGCTGGCAGATTGTGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAACAAGCTGGACTTGTGTAAACAGTCCCCCTTTCCTGGTACTGTTACTCTGTAGCAAATCAGGTCAGTATGGTTGTTGTCCAAGGTGACACTCTTCTAGGCTAGCTCTGACACAGAGGTTGTGATATTCTGCACAGCAGAGTGACCTAGAGCAGTCCCTGCCCGCCCTCTACCTTGTCTCCGTGTCACCCAGAGATGCTTGCTTTTTCATAGGCGTGCCACAGAGTTAAAGGATGTTTCCTCTGAACTCTGTCATTTGTGTCCTTGGGCGCAGAGTGCCTAGAACTAGGAGTAAATCTGTGATTTTGCAAGTCTTCCTGACATTGCCAAACTCACTGACCTCTCCTCCCATTGATTGGGGACCCTGCGCTCAGTGCAATGGTTGGTTGTGAGCATCTGGATCTGTCTTTGGAAGGCTCTGGCAGGGCCTCTCAGGAGACAGCCATATTAGCTTTCTTTCAGCAAGCATTTCTTTGTATCCACAGTAGTGTCTGGGTTTGGTGACGGTATCTGGGATGAATCCCCAGGTAGAACAGTCTCTAGATGGCCTTTCCTGCAGTCTCTGCTCTACGCTTTGTCTCCATATTTGCTCCTGTGTGTATTTTGTTTCCCTTTCTAAGAAGGACCGAAGCACCCACATGTTGCTCTTCCTTCTTCTTGAGCGTCATATTACTTTTTTTGTTAAAGATTTATTTATTTCATGTATGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATCCCATCACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTAGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTGAATATATAACTTTTAACATGTCTTTCCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTCCTTCCTTCCTTCCTTTTTTTTTTTTTACTTGATGGTTCATTTTTGTATGTTTGGTATTTAAAGAATTTAGGATCTTTTTCCTCCAAGATTTATTTGTGTGTGTGTTGACATCATGTGTGTGCGGTGTGCATGTCTGATACCTGTGGAATTCAGAAGTTACTGGATCCTCTGGAAGTAGAGTCAAGGACAGTTGTAACAACCATGATTGGAACCAAACCCAAATTCTCTACAAAGCCAGTGAGTGCTATGAACTTCTGAGCCGTCATTGCAGCTGCTGGGTCTCTTTATTATTTTTATTTTTCCTCTCAATAGAAGAAGTTTATGTTTTAATGAAAACATTATGGTTGCATCTAAAATATACCTGAGACACACAGACTTGCCAGGAGTCCTACACACCTGTTCTTAAGTAACTTGAAATATGCATTATAGATTTAAGTCTTTTGTTGAACAAAGAACTCTACTAACTCTGGGGTGCATGACCATAGCTCAGACCTGGAGAATTTAAGACTCCCCATTTTTCAAAATGGTTCAGAGGACTGTAACATTCCCTTTCTTCTTTCTGACTCTGTTGAGCAAGCTTTCTTTCCCACTTTGGGCTTGCCCTCCGGTATTTCGGCTTCCTTCTATTTTCTCTAAAGGGCTCCTCTCCTCTGTGCAGCTGTCTGCACTGTGGAGCGGACCTCCCTGCCAGTTTATATGCCCTGGCTGTTCTCCCCTCCCTCCCGTTCTCCTGTCCATGTACCTGCTCACATCTTACAAGTGACTTGCACTGAAGTTTTCATTTAGACTCTGAAAAGATGTCCTTGAGCTTTAGCCAAACAAACAAACAAACAAAGCCTCGTCTTCTTTGGACATCCAAGGGCAATGCTGAGAGCAGTGCCAAGGTTTTATGGGGTGGGGGTACCTCTGGGACACTCCTGACCAACAGCTTCTGGCATGGGCTTTTTATTTGACAACCTGTGGCTTCTAGCAGGGAGCACAGTGCCTGGGTAGGGGACTGGTTGTAGACGTTTATTATAGACATTCATTTGCAGGTAATAAATTTGGTCAATTATTTGTTTATTTTTTTCCAAGACAGGGTTTCTCTGTGTGGCCTTGGCTGTCCTGAAACTTGTACTGTAGGCCAGATTGGCCTCAAGCTCACAGACTACTCTGCCTCTGCCTCCGAGGGTTGGGATTCAATGTGTGTACAACCACTGCCCTTCCAAGAATTTTACTTTAATGTGTGCTTTAGGAATTATAGAGGTGACATGTTGGTGAATTAGAGCTCTGTCTAAAGACATATGTCATCTGTCCCTTTGTTTAATGATTTAGTAGAATTCTCACATAAAAGTGGTGTGATGGCTCCATTGTTTATCAACCTGGCATACCTGGGGAGTGAGGATCTCAACTGAGGAACTGGCTCCACCAATCTGACCTTGCCTTCAGGGCCTTTTCTTTTTTTTTCCCTTTCTTCCTTTCTTTTTCTCTTCCTTTCTTTCCATAATTTAGAAGCCTGAGTCTTAAAGAATTTTTTTTCTATTTATTTATTTTATGTGTATGAGTGCCCTGCAGCTGTCTTCAGACACACCAGAAGAGGACATCAGATCCCATTACAGATGGTTTTGAGCCACATGTGGGTGCTAGGAATTGAACTCAGGACCCCTGGAAGAGCAGTTAGTGCTCTTAATCGCTGAGCCATCTCTCCAGTCCCCAGAGCATTTTCTTAAATGCTAATTGATGAAGGAGGGCCTAGTCCAGTGTGGGTGTTGACATCCCAGGAAGTAGGGGCTCAAACGTGGAGGAGAAGAATAACCCAACCAGCCAGTGAGCCCTGTTCATGCGTGCTCTCCTCTTCAGTTCTTGCCTGCACACTTCTTCCTTTAGTTTCCCCCCTTAGTTTCCATCATTGATAGACTGATCTGTAATCCATATAAACATAGTCCTGCCCAAGTTGCATTTGGTAATGATATGTCATAGCAACAGAAGGAAATATAGGACACTACTGAGAAGAACTGCTTGTCACGAGTCCTGTTTGCTGTTTGATTAAGGAACCCAGTTAAACACTTTCATTTTTTTAAGATTTATTTATTTATATGTATATGAATACACTGTAGCTGTCTTCAGACACACCGGAAGAGGGCATCAGATCCTATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTAACTGAGGAGCCATGTCTCCAGCCCGAGCTGTACACATTCTAATATCTGCCTTTTATGCAATCGCTGAACATGTATTCAGGTTCATAGCAAGTTGTAAGAAGGAGTATTAACCAGAGGTCCAGTGAGTTGGCTCAGTGGATAAAGGGATAAGCTAAATATGGTCTAAGTTCAACCTCTAGAACCAACTTCCACAGGATGCTTCTAACTTCCACTAGTGTTCTGTGGCATGCTCACACTTCCCACCCACATTACACACTAAACCAAGGTTTTAAAACCACATACGAGTAGTGTCTACCAACCCAGGTAATGTAGACAGACAATATGTTGGATTTTAAGCAGATAGCATCCTTCTGATGAGTATGAATTCATTGCTAGGATTCTTAGGGAGAAGAGGATGTGGTTGTTTTAAACTTGGGGTAGAGTTGTTCTCAACTGTCTGAGAAATCGACCTCACTCTTTATAGCTCTGGTGGGAAGGAACCTTTCCAGATCTCAGCTCTCAGGTACCAGGATGACTGTTGTGTCCAGCATTTCTAGCACACACGTTCTAAGGACAGCTGATGCTGACCCATGGTGGGTAGTAGACAATAGAACTTGGGATGACAGTTGTTAGAAAGATGCAGTGCAGGAAGAGCAACTGCACTGTCATCTGCACAAGAGCTCATCCTACTTTGATGTTTCTTTCCCAGAAAGCTCCAAGTTACTTTTAGCATTTGTGTTTGAGGAATCTTGGTCTATATGAGCAGTAGATTGTGATGACCACGACAACTTGAACCCTTGTGGAACATAGTTTCGTGTCACCTTATGTCACCTTCTTATTAATTCTGTGTATGTCTGTGGTACCACGAGTCTTACTTTCCTGGAAATATATGTGTGTGCTTTTAG
Seq C2 exon
GAGTCAGTGAGCTTTGAGGATGTGGCTGTGAAGTTCACGCAGGAGGAGTGGGCTGTGCTGGATCCATCCCAGAAGAAGCTGTACAAAGATGTGATGCAGGAAACCCTGAAGAACCTGGCTTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057254-Zfp870:NM_207245:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: