MmuINT0180537 @ mm9
Intron Retention
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:57429577-57430553:-
Coord C1 exon
chr14:57430429-57430553
Coord A exon
chr14:57429697-57430428
Coord C2 exon
chr14:57429577-57429696
Length
732 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
AAATGTGAATCCCTTTCTAGATT
3' ss Score
7.01
Exon sequences
Seq C1 exon
CCTCCTCTGCCTCCTCCTCACCAGCGCTAAAGCCGGGACTGGACCGAGCGGAGTTGTGCGTGTCGCCGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCGCGGAGCTGCAGCCAGAACCCG
Seq A exon
GTGAGGCTTCTCCCCGCCGTCTTTCCTGTCGAGGGCCGCGGAGAGTGGGGGTGGCTGGGAGCAGCGCAGCCTCGGGAGGAGGAGGCGGAGGCGGGGGCGACTGGGGAGGCGGAGATGGGTGAGGGCAGCGTCGGGAGCCTCCCACCGAGCCGGGCTTAACAGCCCGCGGCGGCCGGTGTCGCGGCTGCTGCGTCGGGGCCTGAGGGTGCGCTGGGGGCCGCGCTGATGTCCAGGGCGGCTTCGCGTGCGGCCGGAGGGGTGAGGGAGCGCGGGCGCGGCAGGGCTGGCTGGGTGAGGCGGCCGCGGGGCGGGGAGCGCGAGAGCCTCCGGGTGCGGGCGGCAGCGGCCGGAGGTCGAAGAGTGTTTTCCTTTCTGTGCTGCGAGCGGGCGGGCGGGTCGGGGAGGGGCCCTTTGGCCCTCCCGCCCGGGGGCCGCACTCCCACCCTGTCTGTTCAACCGACACCCCAAGTTTTCCGTGTTAAGGGGCGTCCTCTTACGTCCCGCGGCGTTTTCTCTCTCTCTCTTTTTTTTTTTTTTTGGGTCGGTCTGTCGCAGCTTTTAATCTTATTTGAGCCAGTTTCTAATGGCTGACCTGGTGCCTGTCGCGGGCTACTGAGGAGTTAGGCCCTAATCAAGTGCTTGCGGCAAATGGGACCCAATTGTTGAACCTCTCCCGGGTCGGATTTGTACTTGAGTGGTAACTACTTAGGAGAAATGTGAATCCCTTTCTAG
Seq C2 exon
ATTCGAGGACGCGTTTACTCTTCGACTCAGCTGCGCGCTCTACTCATAATTCTGAAACTGGAAAGAACATATGAGCTTGGCCTGCTGTCGTTTAGTTGATCTATTGTTTATTTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123-Zmym5:NM_144842:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCTGCCTCCTCCTCAC
R:
CAATAGATCAACTAAACGACAGCAGG
Band lengths:
230-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: