MmuINT1000200 @ mm10
Intron Retention
Gene
ENSMUSG00000030858 | 1700007K09Rik
Description
RIKEN cDNA 1700007K09 gene [Source:MGI Symbol;Acc:MGI:1916568]
Coordinates
chr7:131327192-131329299:-
Coord C1 exon
chr7:131329216-131329299
Coord A exon
chr7:131327328-131329215
Coord C2 exon
chr7:131327192-131327327
Length
1888 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GTCTGCACTTCTCTGCCCAGGGA
3' ss Score
7.91
Exon sequences
Seq C1 exon
CTCTCATACCCAGAAAGCCTCCTGACATCTCTTTTCTACTCTCATGCCATCTTTTTTTAAATTTTTTATAACCTACTGAGTCCA
Seq A exon
GTAAGTACTGTCTATATGCACATAGGTGTGATGCCATTCACCATGGCATGGGGCAAGCTCATGGTGGCCATATCTCCCCCAAAATTGAGTCTTCTTTTCCCAGAACCCCCCCCCCCCCAGTAGCTGCTGTCTAGGTGTGGGGCTTCAGGAGGCCCTACTCTGTATATGCTGAAATTTTAACTGGCTTGATCTTGTATAGGTTATCACAGCTGCTATGAAACCATGGCCACAAGACAACATTACACAGTGCTCTTCATGCCACATCCTCTGGCTCTTAGAGTCTTTCTTTCCCCCTTTTCACAATGCATCCTGAGCCTTAGTGTTGGGGGATATAAAGTTGATAATATGTGTCCCATCTATGCCTTAGCACTCACGGTCACTTATTCTTAGCACTTTAACAGTTATGAGTGTGGGCATTAACTACTGCCCACTGCGAAGAGAACCTACCCTGGCCAAAGTGGAGACCAGCATTGACCTATGGGTATAAATATAAACATGAAAAGGCAGTTTGACATGACCACTTATCAAAATTAGAGTATGGGTTCCCTCCTAATGCCTAGACCTCCTCAACCAAGGTCTTTGACCAGGTTTACCAGACATGGATCCCCTCTTGTGGAGCAGGCCTCAAATCCAGTCAGAAAGTAACTGGTTACCCCCACCCCACACACCAAACAGTAATGCCTCCATTGCCTCATACATAATAGCCTGGCAGGTGAGTGTTGTAGTACACAGGGCCCAGCATTGAGTATGACCTCTGATCTGTCTGTCTGTCTGTCTCTCTCTCTGTCTGTCTCTCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTGTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCCCTATGAGGTCTGTACAACACATTCAGGCCCCAAGAGAGCTAGTCATCAGGAGAAAGTTTCCTGATCATTTTGAAATTGATTTCTCTGCTGTGCAACCAGAGTGTGCTGTCTTCAGCAAGAAGGCCTTATCATCTAACTATGATTGATAACAAAAGGTTTTGGGGTTTTCTGGGACCTCCCTCCTCAGTAACCCTAGGGAGTTAACCCATGCTTGACTTAGGTTTATTCTGTTCATTTAATTGATGTCTAATTGTATTTTTTAAAAGTGTTGGCTTTCCCCCAGCAATGAATCGGAAAGCAAGTGGATTTCCGTGACTAGAACATCTCCCCACCGCCTGCCACCCTCATCACTTTTCCTCTGAGAGTGTCAGAGAGTTAAGTTTCAAGAAATTGATTATTCCAAATGAGAAATGTTGAAGATTTAGGTCTTAAAAGAAAACAACAGCTTTCAACACTTGAGTTCCCATCCCCACCCCCACCCCCACTGCCCATAGCAAACTGCATTTACAAAATGGATTTTCAGGTTCTCAGACTGTTGGAGTTCTGTCTTAGAAGTGGTCATTCTTGAACAAGACCTCTGAGGCTCACACTCCGGGGGCAGAAGGTTGTGACTCTGAATGTGAGCATAATTCAGGAGGTCCAGGCATGTGTGCAGCAATCAGCTACTAGTTCCAGGGTAGGCCCATTTTATTATTGAGTGTCTGTTAATTTCTGCCTGCTTGGCCTTCCTCTGCCTGTCCTCCTATCTTCAGAATGTCCCTTGGCTCTCATGCCTCTGGATTTTACATCTCAATCCCCTTTTATGCGGAAAACTTTCCTTCTAACCTACCTTGGGCCAGGTAAGACCTCTCTGGAAAGAGTTCATCTGATTGCTGGGCAAGTGTGTGTGTGTGTTTGAGGTTCATTTCCCCCTCACTGAAGGAAGTGTGAGGAGGCTGCTGTGGGTGTGTAGGAGGGACACCTCATTCACGGCTCGTCTGCACTTCTCTGCCCAG
Seq C2 exon
GGATGTATAAGCCTTTTGACCTCCGGACAATAATCACGATCATCATTGGTTGCGGGATCCTGACAGCCATGTTTCTACTGATAGGACTTGTGCTTTGTCTTTACTCCAAAATATCCAAGGCTCTGAAGTCCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030858:ENSMUST00000188899:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF151931=FAM24=PU(24.0=26.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCAGAAAGCCTCCTGACA
R:
CCAGGGGACTTCAGAGCCTT
Band lengths:
214-2102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types