MmuINT1000973 @ mm10
Intron Retention
Gene
ENSMUSG00000070574 | 2310016G11Rik
Description
RIKEN cDNA 2310016G11 gene [Source:MGI Symbol;Acc:MGI:1916828]
Coordinates
chr7:44668233-44669302:+
Coord C1 exon
chr7:44668233-44668357
Coord A exon
chr7:44668358-44669198
Coord C2 exon
chr7:44669199-44669302
Length
841 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
3' ss Seq
TCCCTCTCGTCCCGACCCAGCGC
3' ss Score
5.81
Exon sequences
Seq C1 exon
CACAGCCCTGCTGTTCCCAACAGCTTAAGAGCAGCCGCAAGCCTCCTCAGACCAAGAGTCCAGGCCCAGAACCCCGGAGTGGGATCTCCAGCCCTGTCTCCATTGGACACGGGTGATGTCGAGAG
Seq A exon
GTTTGCTGCAGCCGTGGGTCGGAAGTGGGGATGTGGGGATTCAGGGAAGTTAACCAAGCCAAGAGGGTGGGCCCAGGGCCTGGCCCCAAATGGCTGAGCCCCAGCCACACACCCCTCCCTCAGGCAGCAGGAATGCGGTGCCAGGACTCATTAGTGTCACTTAGGCAGGTGAGAGCACCTGGGAGGAGCAGACAGAGCTGTGTGGAAAAGGAAAGCAGCCAGGGCCCCGCCCGCCTGGGCAGAGGCTGGGGCAGCACCAAGCTTATGACCTCAGCTAATGGGTGACATAGATCCCGTCCTGCCCCAGCCTCCTCCCTCAGACTCAAGGGGCCAGGACCCACCTTCTTCCCTCAGACACAGGGGTCCTGACCCCAGCTCTCCTCCCTCAGGCCCAGACGTCCAGACCCCAGTTTCTCTCTCAGATTCAGGGGTCCAGAACCCAACCTCTTCCTACAAACCCAGGGGTACTGACCCCAGCCCAGCCTCCTCCCTCAGTCCTAGATTGGTCAGGACCCGGTCCTTTTTCCTCAGACCCTGGGATCCTGGCCCCAGCCCTTCTCCCTCAGGTACAGAAGTCCAGACCTCAGCTTTCCTCCCTCAGGCACACGAGTCCAGACCTCAGCCCTCCTCCTTCAGACACATGAGTCCAGACCTCAGCCCTCCTCCTTCAGACACATGAGTCCAGACCTCAGCCCTCCTCCTTTAGACACTAGGGTCCAGACCTCTGCTCTCCTCGCTCAGACACTGGGTTCCACGCTCAGCTTCTTCCCTCTGACTTGGGGTACCTGGCTCATTATCGCTCTGGGAGCATGGATCCTAACTCCCTCTCGTCCCGACCCAG
Seq C2 exon
CGCCCTATGGCATAGCTCCTTTATCCCGCGGATCCCGAGGCTACCTGGGCGCCTGGCGGTAGAGATGGGGAGGCCTCCGAGTCCAGATCCTCTCCAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070574:ENSMUST00000209111:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGCTGTTCCCAACA
R:
GTGCTGGAGAGGATCTGGACT
Band lengths:
222-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types