MmuINT1000974 @ mm10
Intron Retention
Gene
ENSMUSG00000070574 | 2310016G11Rik
Description
RIKEN cDNA 2310016G11 gene [Source:MGI Symbol;Acc:MGI:1916828]
Coordinates
chr7:44669199-44669833:+
Coord C1 exon
chr7:44669199-44669302
Coord A exon
chr7:44669303-44669662
Coord C2 exon
chr7:44669663-44669833
Length
360 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCTTTCTTTCTTTCTTAGAAT
3' ss Score
11.63
Exon sequences
Seq C1 exon
CGCCCTATGGCATAGCTCCTTTATCCCGCGGATCCCGAGGCTACCTGGGCGCCTGGCGGTAGAGATGGGGAGGCCTCCGAGTCCAGATCCTCTCCAGCACCCAG
Seq A exon
GTGAGGCCGGCTCTGCGGTCCAGCAAGAGGTGGGGCCTCTCCCGTCAGGAAGGCAGGACCGGGTTCTGACGTCTCCTGACACCTGCCGGGCTGGGCGGGGGGCGGGGCCTGGCACAGCAGCCAGCAAAGATAGAACCTGTTGCCAAGTGGGCGGCTGTGGGCAAAGGTGAAGGGCTGGCACAGAGCCGGACTAAGTATGCTAGGGTTCGAATCTCCCTCCAGCCTTCTGAACCTTCACTTTCTTCGCTAGGAATTGAGGCTCATGAGATCAACAAAAATTATTTGAGGAAAAGGACCCAGGTCTCTGTTCTGTTTTATCGTGGTTTTTTTTTTTTTTTTCTTTCTTTCTTTCTTTCTTAG
Seq C2 exon
AATCTCAGTTTCCTGAACCCTGGAAGTGGGATGCCCCAATCCTCAGATATGATGTCAAAATGCTATGCCAGCCTCAGGCTTGGGTCTTCTCCTCAATCGAGAAGGTGATCGAGGAGGAGACATCGGGTGATCATGCCTACGATAAACTTGTGGCTTAAGAGGTGTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070574:ENSMUST00000209111:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCATAGCTCCTTTATCCCG
R:
CTCTTAACACCTCTTAAGCCACA
Band lengths:
270-630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types