MmuINT1000975 @ mm10
Intron Retention
Gene
ENSMUSG00000070574 | 2310016G11Rik
Description
RIKEN cDNA 2310016G11 gene [Source:MGI Symbol;Acc:MGI:1916828]
Coordinates
chr7:44669663-44670599:+
Coord C1 exon
chr7:44669663-44669833
Coord A exon
chr7:44669834-44670433
Coord C2 exon
chr7:44670434-44670599
Length
600 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CCTCTCTCTCTGGTCCACAGCTT
3' ss Score
9.22
Exon sequences
Seq C1 exon
AATCTCAGTTTCCTGAACCCTGGAAGTGGGATGCCCCAATCCTCAGATATGATGTCAAAATGCTATGCCAGCCTCAGGCTTGGGTCTTCTCCTCAATCGAGAAGGTGATCGAGGAGGAGACATCGGGTGATCATGCCTACGATAAACTTGTGGCTTAAGAGGTGTTAAGAG
Seq A exon
GTATGGCTTACAGAACAATTTATTTTTGTTTTTTGTTTTTCAGATACAGGGTCTTAAGTAGCCCAGGCTCGCCTGGAACTCATCATGTAGCTGAGGCTGGTCTTGAACTCCTGATTACTATTATGATGTTTAAAAAAAAAAAAAAGCCACAGGGCCAGGCACACCAGGTCCCTGTGTTCCCCACCTCGGTCCAGTCTATATCTTCACTCTCTGTGAGATGGAAACCACACAAACCTACCTCAAATCCATTCTCCTACACTGGAGGGGAGTTTAGTTATACATTAAAGTGCCCATGTCCATTGTGAGGCTTGGTGGCACACTCTTGTCATCGCGGCCCTTGAGAGGCTCAGGCAGGAAGGTTGGGGGTTGAGGTCAACTCGGTCTACACAGTGAGTTCAGAAGCTATCTCCAAAAAAAACAAAAAACACAAAAAAAACAAACAAAAAAAACTCACAAAAAAACAAAAAACCAAAACAAAACAAAAAACCAAAACAACTAACTAAACCAAGTCAAATCAAAACAAACTGGGACACCCAGCCAAACACATCCTTCTCTGTTCCTGTCCCTGCCTGTCGCGACCCCTCTCTCTCTGGTCCACAG
Seq C2 exon
CTTTTTCCTCCTCTGACATCTGACACGGTAGTCCTGAGAGCTGGGGAATGGAGACCATGACTCAGGTGTTCTATCATGCAACGTTCCAAGCACTGCCTCAGTTTCCCCTTCTGCAGAACAGACCGTGTGACGCTGTCAGAGATGACCCCAGGCTGTCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070574:ENSMUST00000209111:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGTTTCCTGAACCCTGGA
R:
CTTGTGCCAGACAGCCTG
Band lengths:
335-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types