MmuINT1001054 @ mm10
Intron Retention
Gene
ENSMUSG00000064308 | 2410137M14Rik
Description
RIKEN cDNA 2410137M14 gene [Source:MGI Symbol;Acc:MGI:1924047]
Coordinates
chr17:36978651-36981237:-
Coord C1 exon
chr17:36981140-36981237
Coord A exon
chr17:36978934-36981139
Coord C2 exon
chr17:36978651-36978933
Length
2206 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTCTGACTCTTCTCCTCAGACT
3' ss Score
8.86
Exon sequences
Seq C1 exon
GCATTTGGAGGAGCTGATGCGCCTCGCCAGGAGGATCTTAATACTCGGTCAAATCGAACTGTGGACCCTGTTCGGCTATCATAGCCAGAGAGAGAATG
Seq A exon
GTGAGTGATCCTATATGGAAGGCTAGTCTATAGTCTCCGCATATTCTTATGAAATATGTACCTTGGGCTGGTGAAATCTGCAAGTTCCTGCAATCCTGGAGAAGCCTGCAGAAATTTACTGTGGTTTCATTTCAGTTTGAAGTAGGCTTTGACCAATCACGAGCAGGCTGTGTGCAATGAATGGGGCTAACCTGGGACATGGTGCTGACCACTTTGGCCTCAACAGAGTCTCACACTGTCCAGTGACTAATCGGCTGTGACATAGGGCCAGACCATCACCTCCTCCGTGGGTATAAGCACATCACTTATGAAGGCCAGGATTACATCTCTCTGACCGAGAGGACCTGCGCTCCTGGGTTGCAGTGGATACCGAGGAGTCTCAGATCACTAGGTGCAAGCAAGAGGCATCTGGTTTTGTTATATCATGCACATCTTTCTTGGAGGGAAGGTGCGTTGAAGTGGCTTCTCAAATACCTGGATAAAGGGGAGGAGATGCTGCAGCATGCAGGTTTCAGGGGTAGCTTCTATTGGCCCTTGAGCAGACTTTATGCCAGGACCAATTCCTAAGCCACCTATTGTGAAATACTGTCCCCCAGGCTCCACACAAGGCTGTTACTGTTTCAAAATCAGAAAAGCTGTGATTACCCTTACTGGGGATTCTAGCCATTCACACCCTCCTATGTTCCCCAATCACAAGGAATCCTACTAGCCACATCTGGACTTCAGAAATATTAGTGTATATGGGAACTAGAAGGTTAATTGATGGTATGGGTGTAGTGGCTGATGCCTTTAATCCCATCATTGAAGAGGCAGAGGCAGGCAGATGAGTGAGTTGGAGGCCAGCTTTGTCTATATAGTGAACTTCTGGATAGCCAGTATGGTAATGGTGTGTGTGTGTGTGTGTGTGTATTAATTGATTGAATTCATTGGTGGCACACTCCAGTGATCTAGCTTTTGTGAGTTGTCATTCATGCTGGAGTGGGCTTTTCAGTGTTGTAGGTGTTTATGAGTATTAAGTAACGCCTCACTCGTGTCTGTAAGTAACCTTCAATGCATTTATGGGATTGCCAAACTGTGTTGGATGGTAAGGATGGGCTTTGATGGGATCATTCATTTGGTCTGTTGTTGGAGTCCTGTCTGGGGTGAATAGATATCTATCATATCTCTCCGGAGAAAGTAATAAAATACTCTACACCCAAGTGGGGACCCAGCAGGACCAAAATGGGCTTGGGAGGATCAGGTTCACGGTTACTGGGATATAAGACATGAAATTGAAGCCAAACCATCCATGGGAGAAATTACTGATGTGTCTCTGCTTTCTCCATGTGGTGTGGAATGGCAGCGGAGGGTTGCAATGCACTTGGTGTGGATGATTGGACTCACATCTGAGACTGCTCCATCTGAAGGTGTATCGATACCTCGACATGGCATGCTATCTATCACAACAGCAACAGCAATTTCTGAAATAATACTTGTGGGGCAGGATCCTAAGCAGACAGTGACAGCAGTTGTGTGTCCTTTGCTGTGGGCAGTTGAGACTTGCAACTGGGGCTTAGCCATCTTCCCAGGGCTCTCAAGGCTGTGGGACATAGAAGCAGATGGGGTCTGGGTGATGTAGAAGTAGAGAAATTGAGTGTTGTCACTGCTCATTCCTCTCTGAAAGAAAGGTTGCACAGTCTGAGGCAATACAAAGGAATCATTGGGCCAGCAAGATGTCTCAATGTTTGGTGCTTGCCATAAAGCCTAACAACCTGAGTTTGGAACCCTGAGCACACATGGAGAAGGAGAGAACAAGTTGTCTTATGACCTCTAGATAAGTGCTGCACATGTATAGGGGTACACACACATATTGGTCTGGAGCAGAGGAAGCCTCCCTGATTTCCAGATCCCACAGGATCCACCTGAGCCACAGGGAACATTTTTACATTGAAAGCACAATAGTGGACTCCATCTTTTCGTGGATGAAGGGGTACCAGCTCTGAAAAGAGTGAGTGCCAGTCCTGTTTTGATCTCAGTCCCCGTTTCTGCCAATGTTCACAGATCGGGAACAGATCCAAGGAATAGATATTTCTTCATCCTAAGTCCATGCTGTGTAAGAGCTGCTGTTTCAATTTTCAACCCAACTATGGGGATGATCACATGACTAATGCTCATATAGTCCACAGGAGAGAACAGAAGGTTGTTACCCTCTGACTCTTCTCCTCAG
Seq C2 exon
ACTCCCCCCAAAACAAATGTGGCCCATCATTCAACGCTTGAAGGTGATGTCACCCTGAGATGCTGGGCCCTGGATTTCCACCCTGCTGTCATCATCCTGACCTGGCAGAGGGATGAGAAGGACCTGACTCAGGACATGGACCTTGTGGAGACCAGGCCTGCAGAGGACGAAGCCTTCCAGAAGTGGGCAGCTGTGGTGCTGCCTTCAGGAGAAGAGCATAAATACACATGCCATGTGCAACCTGAGGGGCTGTCTGAACCTCTCATCCTGAAATGGAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064308:ENSMUST00000039846:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765410=C1-set=WD(100=87.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types