MmuINT1002616 @ mm10
Intron Retention
Gene
ENSMUSG00000072591 | 5930412G12Rik
Description
RIKEN cDNA 5930412G12 gene [Source:MGI Symbol;Acc:MGI:2442398]
Coordinates
chr5:128579106-128582987:-
Coord C1 exon
chr5:128582715-128582987
Coord A exon
chr5:128579286-128582714
Coord C2 exon
chr5:128579106-128579285
Length
3429 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
CCCTGGTGTCTCCCTTGCAGGTG
3' ss Score
12.85
Exon sequences
Seq C1 exon
CCCCACTTTCTGTGTGCCTGTGTGTGCATATATCTATCTGCGCATGTGTATGGAGGCCAGAGGACAACCTTGACTGTCGTTCACAAAGTGCCTCTCACATTTTGTTGTGCTGGAACTTCGCCTAAGAAGTGGGTTAAACTGGCCAGTAAGCCTCAGGAGTGCTTCCGTCTCCACCTTCTCAGTGCTGAGATTACAAACTGGAGCCTTGTGTCTGGCCTTCAACGTGGATTCTCAGGATCCAAGGATCCAACATTGGGCTCCCATGCTAACAAG
Seq A exon
GCAAGGGCTTTGCTGACAGAGCTGTCTCCTCAGCCCTCGGTGTCACTCACTTGCTATCTACCATGTCCTATAGCATATGCTCTAAAACGCAAGCCTGGCTTTGGTTTCATTCTCTGAACTTGTGCAGCCTCTGGAGTCCCCAGGCACAGAACAAACAGATTGACTTTTGGTTTCTGCTTGTCACTCACCCAAAACAAACTGTTCAAGGCTCAGCTCTGAGTGCTGAGTGCAAGCCAGCCAGCTGTTCATCCAGTGTGGGGATTGGGATCAGAGTGTGGGATGGATGGGCTTTGTCACCACAGCCCCCTGTCTAGACAGACAGGTTCCCAGAGGTTTGGTGAAGCAGACAGAGGAGGCGATACTTCCCAAGGGCATGCAGAGAGGATCCTGACGCTTCTCCCCTTCTTCTTCAGGCCTTTGGCTGTGACACACTTCCCTTGGACCCCTTTAAAAGTCCCCAGAGTGGGCTAGCAAGATGACTCTGTGGGTAAAGGCACTTGCTGCCAGCCAAGCCTGATTGATGGCTTGAGTTCAACCTCTGGAACCCACATGATGGAAGGAGAGAGCTGATTCCCCCAAGTTGTCCTCTGACTTTCACATGCAGTGCCCGTGCACACACACACCACATACATGCACACACACACACACACACACACACACACACATTTTTTATTGCCCTAGGGAGGGAACAGGCTCTGTGTCCAGCATGTCCAGTGGTATCTTTCATAGACCGCCACCTCCCGGGGTTTGGGGATGAACACACGTATGAAAAGACTCCTTCCCTGTCCACAAAGACAGGGACAAGCTTTATAAGACAATACCAGCAGCTACCAAGGGCACACAGCAGGAGGCCTGGGAAAGCAGAGGGACAAAGGCCTTCCTCTGGGGTTGACTCAGAACACAGCCCTGACTGTAGCCGGTCAGTTGGTGCCTCTGGCTTTTTAAGGGGCTCCTTGAGAGGACCCTGGGATCATAAGGCTGTTTCGTGGTAAGCTACTCCTCCAGCGGATTCCCATTAGTGGAGGCTCGGGGCGGGCGGGTGGGCTGAGGAGTGGGGTTGGAGAAGCACTCTGGGTGGTCTGAAAGCAGGCATGGGGCTGGGGACCGGGAGGCGCCAGCCAGTCATCCTTCCAAGAGACTTAGTGAAATGCAGGCTCCACTGTGAGGCTGGGTGGTGGCTGTGGTGGCTGAGAGTCTTACTCAGGGTTGGGGGGGGTCATCTTTGAGCTCAAATGTTCTTTGCTGGTTTACAGAAAGATCGTGGGGTGGGGTTGGGGGGATGAGCTCTAGAGCCTGGTCTCTGTTTCTCTGCTGCGGAACTCAGCTCCAAGCAGAGTATATACAATGGCCCCTCAGAGCCTCAGATTTACCACTCAGAGTGTGTCCTGCACCCCAGCGAGAGAGAGAGAGCATTGCCCTACCTACTCCAGTTCTCCTCTTAGCTGGTGAGAAGGCAGCCAACAGGTGACATATGGGTGAGCTTTCAAAGCCAGACAGGGAAAGGCCTGAGAGTGGAGGAGGGCTGGGGCTAGGAAGGAGTAACCTCACTCCAGCTTTCAGCCTATAACTGTGCTACAGAAGTGAGTCACTGTGGCCTTGAGGCGGGGAGTCAGCTCTGTGGAACAAGTGAGATTCCATCTCTGTGTAGCAGCTAGCTACCTCAATGGTTCTCAACCTGTGGGTCACGACCCCCGCTGGGGTGGGGGTTTTGTATATCAGCTATTCTGCCTGTCAGCTATTCACACTGTGATCTGCAGCAGTAGCAAAGTTACAGTTATGAAGTAGCAATGAAAGTAATGTTATATTTGGGGACCAGCACACCATGAGGAACTGTGTTAAAGCGGTCAGAGCATTAGGAAGGGTGAGAACCACTACTTTATCTATGCCCTATCTACCTGTCATCAATTCATCATTTATCAATCACCTGTCTATATATTAATTATGTTATCCATCCATTTGTTAATCTGTCCAAAATCTGTAATTTATCAACTATCCATCCAGCTATAATCTATGAATCTCTCTATCATCTACATATCTTTCTATAGAAATCATCAACTATCCATGCTTCTGTCTATATGTTCTGCCACCATCCCCTGCATCTCTGTCCATCCCTACAGCATCTTCTCTGTCCAGCTCCTGGTAGCTGACAGCCCTGCCTCCTCCGCAGCCAATGGCTGGCACAAACCCATCACCGTCATTCTCTCTACTTGAGCGCCTAGCTCTGTACCTGCACAGGGGGACTTTGGTTGAGAACAGGCAGGTTACTGCAGGCCCAGGGTGCTCTCTGTATTTAAATGGCTCACACAGGTGTGGGCTGGGTGTGTGAGTCCTTAGAGGTTGAGCAACACATCTGTTCCCCTTGACCCTCTGTTGGGCCACACTGAGCCTCTGCCCTGTGCCAGCTGGATGCCCATTAAGATCTACTGGAGCCTGCTCATCCTTCCCAAAGAACCCTGCCCCTAGGCAGAGGGTGGGGGACAGGGAAAGTGAGAGGGAAGACCTTCTTGACTTCAGACCAGGTCAACCCAAGAAGCACAAGGCTGTCAGAAACCTTGAGGACCACGGAGTAAGAAATCGTCTTGAATAGTGGTTAGCACAGAGATGGCAATGCCAGGGCCAGGAGCCTCAGAATAGAAAACACTGTTTTTCCACTTTCTCCTTTAAAAGCCTCATTGGATTGTGAAGTTGAGCTCTTGAGGGCTGACAGGAAAGTTTGACAAGGTGCCTGTTCACCTGGTAGGGTTATGAGGGCCTGCCACTGGCTGTCTCAGCTTTTGCACCCCTCTGCACCCCCCCCCCCCCGTTCTCCCTCTGCTCCTCCCCCATCCCCCACATTCCCCACCCCCCTCTGGTCAAAAGCCACTTCCTGCCTTCTTTCCCTCCTACCCTGGGATGGTAGCAATGCAAAGCTCACTCCTCCCAACTCTTCCCTGTGTGGTTCGAGGCTAGCCACCTCTCCTTCTCACCACCCTCGCTACACCCTGGAGCTGTGTGCCCCTCTCACTGCGGGGTACTCTCCTCCTCTCCAGACAGACACCTGGAGCAGAGAACCCTGGTGTGTCCATCCTGACAGTCAAGCTTTCGGGACCTGGTCCTGGAGCCAGCTTGCTATTTTCCCCTCTGTCTCGGAGTGACTCATGGTTGCTGGAATCACCACTATCAACAGCTCACACCTCCTACCTGAGGTCGGCTGACGCACCCCAGGCTGGCCCCTGGCCAGCTTGGGTTGTTTTCTACACAGGGTGTGCCAGTGGTTCCTAGGAGTGGCTTAGGGTAGAGCCGGCAAACTGTTTTCTTTTCTTTTTCTTTTAGGCGGAGACTTCTGTTTAGGTACTGGGCAGCCCTTGTTTGCATAATTGTCACCAGTCAGCCTTTGACCTACTGGGAGGTCAGCGTGGTTCTCCTGACCCCCTGGTGTCTCCCTTGCAG
Seq C2 exon
GTGTTCTCCTGGCTCTTCAAGTATTTACCCGTCTGTGTGTGACTCATATCCAGGAACCCAGGCAGCTTCCCTCAATAGATTGCTGGCTTCAGAAGATGAGCCTCCCCTGCCGCTCCACAAGGCTCAAGTGCTTCAATGAAATAAAAGAGAACTGAAATAAAAGAGAAATAAAAGAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072591:ENSMUST00000154305:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types