MmuINT1002884 @ mm10
Intron Retention
Gene
ENSMUSG00000084808 | 9430091E24Rik
Description
RIKEN cDNA 9430091E24 gene [Source:MGI Symbol;Acc:MGI:1924618]
Coordinates
chr8:111137443-111145459:-
Coord C1 exon
chr8:111145404-111145459
Coord A exon
chr8:111137553-111145403
Coord C2 exon
chr8:111137443-111137552
Length
7851 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGTGCTTTCCAATTATTTAGGAG
3' ss Score
8.41
Exon sequences
Seq C1 exon
CTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGATGCGGGCCCCTGAG
Seq A exon
GTAGGAAGCCGGCTGGGACCCGCGGGTCCGGGCGGCCTTCTGGTCCCGCGAACTCTTGCGCCCCGCACGCCCCTGGCGTCCGAGCTTTGGGCTCCGGCTCCCGGCCGTCCCTCCGGGTCTCTGAGGCGGTGCCACCGGTCGGGCGCCGGGATTGAGCCAGTGGAGCTGTGCGGGCCTCGGGGAGCCGCGCCGGCCGCCCCGGGACTGCGCGCCGGCTCTCCCAGGGCGGCCGACCGGGCCTCGGGGCGGGCTGCGGCTCGGGCGGGCGCGCGCGCACTGCTGTCACGGCCAGAGGTGGCCCCGCGTCTCTGCAGGTGGAATAGTTTCCCACCTTGTAATGTGCGGCTCGGCTGTGCTTCACCGACTCCTGTCAGAGACCTAGTCAGGGCCGTGGGGTTTCCGGTGGGTGACAGTTGTGTGTGATCCACGGTCTCCAAGCCTACTTTGCATGATGTCCGTGGGTGGGCGAGGGCCGCTGGCAGGGAGCAAGGCCAGAGGTCAACTTTGAAAGCCACAGGGATTTGCATCACTTTAAAAAACTAACTTCATATTTTTAATATTTACTGGCTTTGTTTGTGTGTAAGGTAGAGGTCAGTAGAGAAATTGGGGATGCGTTTCTCTCCTCCAGATGAATCCAGGGATCGTTCCTAGCCGATCAGTCAAGTACCCAGGTTTTTTGACTTTTACCCGCTAGCCATTTTTGTGGGCCCAACTCTCTGAAGCTCTCTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTACAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAAAAATCCGCCTGCCTCTGTCTCCCAAGTGCTAGGATTAAAGGCGTGCGCCACCACGCCCGGCTCTGAAACTCTCTTGATACCTCCTAATGCACCTGTTGAAAAAATAAAAATCTGCAGTCGGGCTGGAGAGATGACTCAGTGATTAAGAGCACTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGGGATACCCTCTTAACGGTGTGCATGAAAACAGTGTACTCATATACAGTAAATAAATAAAAGGAAAATCTGCAGTCTGGACCAGTTGGGTCACAATGTCCAGCAGGTTCTGTCCTTCCTTCCCCATTCGTTCATCCATCCATCCATTTTAACATAGAGTCTCACTAGTAACCCTGGTTTACCTGGAAGGCAGAGAGTCACCACACAGGCCTTCGGTTGGTAAGCAAGTGTCCTGTGGGGTTCTGTTGTGTGGGGGAGTGTGGCCGTCCACCTGTCTTTTTGACCAGCAACCCATCTGTGGTTAAAGCCAAACAGAAGAAACTCTGGAGTCACTTCAGTGCTGCCCCTTTGCTGGGGTTGATTTAAGAGGAGCCCAACAGAAACAGCCTGGGTTGTTTGGCAGAAGTTGTTTTAACTGAGAGTTTTACAGTTACTCTCAAGGACTTTTTAAAGGGTGTCCATTGCTTTAAGCTTACTGCCTTTTATCTTCTGCATCTCCGGTGTCACTGGCGTGATTACCCTCGTTGCTGTTGAGGTTTCTTTGGCTTTGACATTCAGCCTGCTGGAGAAGACTCCAGAGCCTCCCTTTGCTTCTTGCTATTTGGTTTAATCCCTTCTGCTCTCACCTAGTCACTGTTGTAGGTCAAGATGAACACTAAACCAACAGTCTGTCAGGCTGGGCTTTTGACATGGTTTATTTCCTCCTGAAACTCATCTGTTGCTGTTTCTTCTGCCATGTCTTCCTGCTAAGGGGTGAGTCTTAGCGTTCTTTCCCACGGTTGTATTATCTTTTCTCGTCTAGTTTTCTTTGAAAGGGCTGCATAGCGTAGAAACAGATAATGACTATGCTAATGATGACTGACTGAAGATGATGGGTTCTCTGGAGTAACTGGTCCTTTCATCACCAGCTGTACATGACCAAGATGCCAGGACATTCATGGTCTTCAAAGATCAACCTGGGCCAATGGCTCTGGAGTTTGTTGTCTCATGCCAGTGAAAACTAGGAGACAAGACCTCTAGTGGGAACAAGCAAAAAAACCCAAAAAAACCAAAAACAGACTTTAATTATTACAGCGACTGAGGAAAAGTGAGACATGAAAACGGGAGTAACTCTCCAGAGTCAGAGAAGGGTTTCCAAGAGAAGGTGGCTGAATTTCCTTATCCAGGGTTTTTATAGGGCAGTGGTAGAAACTGATAACAGATAAGATCTCTCCAAATTGGTTTGGTTCTCTTGACTATAGTGGGTCAAGCCAATGCAGGGCCCGCATTCTGTCACACGTCCCATTCACCCAGCCAGAGAGATGAGCATGCACTCTTCAGACATTGGGGGTCTCAAGGCTCCTCTCAGTCATCACTGACTCTGGCTTTGTGGGTATTGACTGTTCCCTTCACTGCTGGCCATAACTTGCTGGTGTTTCTTCCTACAACCTTGAGCTGTCTTATTAACTTTTTTATTTTATTTTTTTAAGATTTATTATGTGTGCTGCACTCTGCCTGCTTGTATGTCTATATGCCAGAAAAGGGCACCAGATCTCATTATAGATGGTTATGAGCCACCATGTGGTTTCTAAGAACTGAACTCAGGACCATTGGAAGAACAGCCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCTGTTAATTCTTGATTATGTATTAAACTCTGACTTTGTTAGTTGTTGATTTGGACTCTGCTAGCTATTCTACTGGCTAGTGTTGCTACTTCTAGCCCAAGTGTTGGTAGTTGTATAGAACTCTCTGTTCTCACAGCTACTAACAAGTAATAGCATTTTGGGTTATCCCTGTATGGGGATGGTCTGGTGTCTCTTTCTTGATGTGAAGACAGGCTCTAATAGCTTCAGTAGAAGCACTGTATTAAAAGAAAGGCTATATAATAAGCAGGAGTGCCTAGCATGTCTTTTCCAAGGAGGAAATGTGTCTTTCTGTCCATCACTGGCACTGGCCTGGTACTGCTGTTTATTTTCCCTGTTTGTTTAAGATAGGGGGTCTTAAGACCAGGCTGGCCCCAAATTTAGACATGTGCCTGCCTCTGCCTAACAAGCCTGGGATTAAAGGTGTGCACCACCACTTACTGGCCTTCCTTTATCCTTAGCCTGCTGTTCTCTTTAGCACGTTCTTTTTACTGTGTCACCCAGCTGCAGGTGTCTTTGTGTCTCTTCCTTAGTATTCTTGGTTTCATGTTTTAAGATTTATGTATTTAATGTGGATGTGTGTTTGCATGAATGGGTGCATACATATACATTGGTGTATATGGAATGACTTGTGTGCCTGGTGCCTACAGAGCCAGAAGATGGCATAGAATCCCCAGGGGCTGTTTGTGAACTTCCAAAAGGGTGATAGGAATTGAATCAAGGTTCTCTGGAAGAGTAGTCAGCGCTTTTAACCTCTGCAGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCACCACCACACCCGGCTTATATCTGCAGTATCTTGACCTTGGCTTCACTGTTTTGGCTTTGTTTTTTGTTTTGTTTTGTTTTTATTTTAAAGATTTATTTATTTAATGTATATGTTCTCTTCAGACACACCAGAAGAGGGCATCAGACCCCATTGCAGATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACTTAGGACCTCTGAAAGAGCAGTCAATTCTCTTAACCATTGAGCCATCTCTCCAGCCCTGGCTTTGGCTTTTTAAGACAGGATTTCTCTATGAAATCCTGACTATTTGAGAACTTGATCTGTAGACCAGACTGGCCTCAAGCTCACAGAGGGATGCCTGCTTCTGCCCTCCAAGTGCTGGGATTAAAGGTGGTGCCACCACCACCCTGCACTGGCTCTACTATTTGAACTTTCACATTTTTTTTTTTTACCTTAACATCCATGTTTGGCATATGTGGGCAACCTGTAGTTTTTACTGTTGGGGTTTGGATTAAGGTTAGATGAGGCTATAATGAATTATGACATAGATGTGAGGACATGTAATGTTGACATTTCTCAGGAACTGAATTTGGAATGCTACAGAGTGAAGGAACACATGATGACCTGTGGTGTTCTTAATTTTTAGACAATAGTTAGGCCAAATGAGGTACCCATGCCTCAGATATTTTTAAAGAAAAACTACATTATTGGACTTTATGTAACCTTGGATATGCTGGCCTGCCTTGTTGGGTAAGACTTCCTTGTTAAAATCTAAACCTGTAACTCTGTTATTAAAGGAGCTGTAACAATAAAATGAGCCTTGTTTACAGTTTGTGCTCTGTGCTCTCTTGCCTTGAATTCTCTGGTGTTTGCATCGGTTCTTCAGCATCCATCAGTCAGGAGAGCAGATTTGGCTACATCTCATATTTTACCCTGAATGTTTTCCTATTACTGTCTGCTGAGCTACCTCTTAACCTCATTAGACTCTGGTATATTGTAGTGGGAAAAACCAACTTGCAATTCCAAGGGGCTTTCTGATCACCAGGAGACACAGCTCCACGATACAGTTCTAGTCTTCCTTAGTTACCATCTGTCTAACCCACAAGCTTCATTTGCTCTCACAGTTGTGTTTAGTGGTGGTGGTGGGGGGGGGGGAGTACTATTTCATGAGTGCTTCTGTGACACTACTTGCGTATTTTTCCTGCATCGCCTGATAATTAGTCTTTCCACAGGCATATGAGGTAGATAATTCCTAGACCATGTAACAGATGGGAAAATCCTGGAGTCTAGATTCTCGTCTCGTAAGTTGTGTTGCTTATCCATTTTATTAGCTTACATATAGTTAGGTGGTTGGAATGTTCTGTGCTGGGAGAAGGTCAAGGCATCAAGGGAAAGAGTTCCTTAACCAGGGTCTGTAACTTCAGTGTTGTGAGATGAGAGACAGTGCACAGCACACAGGTCCTGGACGTGGAGGAGGGGGTTAAGCCTGACTTGTTTGAGAGGCAAGAAGAACAGTGAGGCCAGAGATAAGCCAGCTTGTGAAAAGGGCTGCACTGAGTAGTAAGGAGCTTTGACTCCTTCCTGCAAGCATCAGCCCATCACTGGAAGGCTGTGTGAAGGGCGGTGAAATAAGATTTCCATTGTGGAAGACTGTTGTTCACTCAGGCCTGTGTGTGGACTGAGGTCTGGGGGAGTGGATAAAGTTCTACAGAAATGTCAAAGAAGTGTATTTTTAAAAAACTGTAAATTGTTTAAGGTTTTAGCTACATTTTAGAATTTTGATACTAACCATATCTCCTGCTAATTAACCCTTTGTTCCTCTTTTACATAAACATGGGCTTGCTTACATGCATATGGTAGTGGGTCATGTTCATTTTTAGCCACATCCACACTGTACACAAGCCTGTCTCTTCCCTCCCTTTAGTTTCTAAACCCCTTAGCAGCAGAGATATTTTATCCTTTGAGAAGGCATGTAACCAAATTAAAGGACATTTCACAAGTGAATATTACAATAGTTATGGAAACATCTTTTTATTCATTTATACACCTAATACATGAAAAGAAAATCTCAATTCAAATCCAGCCATCTAGAAATAATTCTGGTCATAAATGCACAATTACCCCATGTGTCCAAAGTCGGCTGAGTTTGCTCTTAAGAAAAGATTTTATTTACTCCAATATCTAGAATGTCCTCAGGATCACATGCTGATACTACACAGGAACAGAAGGGAGCTGAGCAGAACCACACACTAAATGCGAATTTAAAGATCTTTATAGCAATTGCACTGGTGTCTTATATATCTTAAGCATTGACCAGAGAGTTAAGTATGCGCTAGAAAAGCTTTCAGTGAAATGAGCTGCAGAACTTTTTACCCCACACCAAGGTTATTTTGAACAAAGAGGGCTGATGTGGGGGATGAGAACCTACAGACCGAGCATCCTGCTTTCATCCTACCTCAGTCCGATGCTGGACATCCTGGAGTGTAAGGCACTAGAACTGGCCTGAGAAGTGCTCCAAGCTTCAGTTCTTGGTGTGCAAAAGAAATCTTGGCATAGATCTTTTGAAACATGATAAAAATAACTCCCCCTCCTCTTATAATCTGTCATTCACAGACAAAAGACAAGGAGGTAGATGTTTGCAAAGATGAATCAAAATATGAAGAAAGTGTGTATAATTATTCAGATTCGGACAACTGCTTAGAGGCCAAGAGTCTTATACAGGGAAATGCTGACGTGACAGACTGAGATGGCAAAGGGGAACGCTCGATCCTTGTGAACAGTACCTGGTGCAGGTACTGCTGAGGACTTGGAGAGAAAGCCCCATGCTGACGAACATGGGGGCTTACAGATCAGCACCTTGGAGGCCAAAAGAAAGGGAGGTGCTGCCAAGCCGCCCACAGCTCAGCCACAGCCGAACTCAGGCATCATCCTCACCCGCTCACCTACTGCTCCTCAAGCTGTGTGCCTACAGACGTAAGGGCAGGAGGAGCATCCTCCAGTAGAAGGAAAGTGTACTGTGTTGATACTATGCTGCTTATCAACATGTGAGCTGGGGGTGTTGGGATGCAGAAAATGGAAAAGTGACTTCATTGTCCTAAATATAAATCTGTTACCTTAGCCAAGAAGTTAACCAAAAGATACAAAGATGAAATTTGTAGTTCACCCCTGCAAACAGGATGATGGAACTGCTCATCCAGGTCTGTCTCCAGGGCTAGTACCAATACTGTAAGGCATACAGTTCTCTCCAAGGACAGTGAAGAACTTTTCCCATGCTAGCAAATGTGTTCATAAGGTAACCTGAAAATCAAAGCTGTCACCCACATCCCAAAACAGATCAGTTAATACTGAAATCTACAAATTTGTTTTTCATGTTTGGTTACTTTTCTTGAACACAATATAGAGGAGACAGGCCAGAGCTAATGTACTTCCACAACAAGTGCCAAGCTGAAGTGGCTATATAGTCCACGGCTGCATAAATGGGCTCTTGGTGACCAGACTGAAGCTAGGGTTTACAATTGTGCTAAATGATCCTGTGTGCAGGACTAATATGATCTGTAGGAACCCACAGAAGAACTAGAAATGCAGTGAGGTAGTCTCACAATTAAGACTATTCAAGCCATTCCTCTTTGTTCCTTTTTGCAAGTTCAGTACCTATGTCATGGAAGGGAACTCTGTTACAAGCTTGAGCATATTTCAAATAACTGTGGTAGTGCTGAGAAATAGGCTTTGCATCTGGCTAAGAGAAAAGAGCCTTCATGGAGTATCACAGAAAACTTCCAATTCTAGGTTTTCTATATACTTTGTTACCTTGTTCAAAGAGATTTAATTGCTTCTATAATCAAAGAAGAGAACATGGAACCCCCTCACTTCTAGGAAGTAGATGTGGTAACATTATTCCAGAGAATCTGTCACCTAAAACTGAAGTGTTTACAATCCCTTAAAGCTAACCGGCTCCCCAGTGTGTTATACAAGGCAAGCCAAGATAGCCTCACTGTCCCTGAACTGGAAGTGTCACACAGCTCAGGAGGTACAGTGATTGTTCCTCCTTAGTCGTCCTAGATTTTCATTCACGCCTCTAGAGCAGTGGTTCTCAACCTTCCTGATGCAGTGACCCTTTAATACAGTTCCTCACATTTGCAGTGACCCCAATGTAGGGTCACTGCTACTTAGTAACTGTGATTTTGTTACTATTATGAATCATAATGTAAATATCTGTGCTTTCCAATTATTTAG
Seq C2 exon
GAGACCTGTGAAAGGGTCAGGGGTTGCTCTAGAGCTACCATTTCTGCTAACAACTTGCATCTACTCCTGAGAAGCCCAGCTCTACCACACTGGTGGATCAGATATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084808:ENSMUST00000127301:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types