MmuINT1002930 @ mm10
Intron Retention
Gene
ENSMUSG00000078776 | 9530053A07Rik
Description
RIKEN cDNA 9530053A07 gene [Source:MGI Symbol;Acc:MGI:2442118]
Coordinates
chr7:28131419-28137633:+
Coord C1 exon
chr7:28131419-28131768
Coord A exon
chr7:28131769-28137062
Coord C2 exon
chr7:28137063-28137633
Length
5294 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCACTGTCACCTCTCTGCAGATC
3' ss Score
10.69
Exon sequences
Seq C1 exon
CTCTGCTCACCCCAGCAGAGGCATCCTGCCAAGGCATTCAGTGTGCACCTGGGCAGCGCTGCCAGATGGTGAGTGGGAAGGCTAAGTGTTTGGCAGAGTCCACAGCTGTCTGCCGTGCCCAGGGTGATCCCCACTATACCACCTTCGATGGCCATCGCTATGACATGATGGGCACCTGCACCTACACCATGGCTGAGCTGCGCAGCAGCAAGGACTCCCTGCTGGCCTTTAAAGTAGACGCCAAGAATGAGCACCGGAGCTCCAACAAAGTCTCCTACGTGCGCTTAGTCACTGTGCATGCCTACAACCACACCGTGTCCCTGATCTATGGAGAAGTTGGCCTTGCGAAG
Seq A exon
GTGAGTTCCCCAAGGCTGTGAGTTTAAGGTTAACCAAGCCAAAAAAGCAAAAGGAGCTATAGCCTTGGTGTTAGACCCCAAACCATCCCCTTTCACCACCATCCAAATAAGCCAACTGAAGGGATGGGTGGTGGTGGCAGTGAGCATTGGAAAGAGAGTCACTCAACATGACTACTTTGGGAAGTAACCCTGAAATCTCTCTTGAAAGTAATGACAAGGATGTTGTGGCCTAAAAGGAGCAGGAAACAAAGCAGGTGCTTGAGCTGTGCACAGCAGAGAGCGCTGTTAGCCATGCTTAAGGTTTGAATGAATGCTATTCAGCTCTGGTTCTACAAGGGCTCTGGAAAAGATGGTATCACTGTCATTTCTTGAGGGGATCAATCTTTTTCCCTCAAAGTGATTACTTTGGCCCAAAATGTGTGCCTTGACCACAGTAGTTCACATCTGGGGGTGATCTCAACGTGGTAACCAGTCCTGTGAGGCTTGCTGTTGCGTATGAGTAGTTTCACACACCCCCAACCTCCCTGTTATATAGATGTTTATTGGTCTATAGAAGCATAGAGAGTGTTTTGAGGAGAGAAATGAAAATTAGAGGCTCGGCAGGATCAAAGAAGAGGGCTTAGAGAGATGGCTTGGCAGTTAACAGAACTCACTGTTCTTCAAAATGGCTGGAGTTCAATGCCCAGCCCCCATTGTCAGGTGGGTCACAGACACCTGCAAGTCCAGTTCTGGGGGAGCTGATGCCCTCTTCTGGCCTCTGTGGGCACTGTGAGTATGTTCATATCCATCCATTAGCAGCGTATGTCCTGAACTTAGTGGCACTCTACTGTCAGCATGGGAGTACTATAAAGTGACCAGTCAGGTGATCAAACTTTTGGAACTGTGGTTTGGATTTCCTTGAGCACCTCCTGTTACACAAAGCATTGCTGTTTTAAGTGAGGAAATGGTGCTCTTTCTTTAGAAGAACCCCCAACAGGCTCCATCTGGAATCCCATCATCCCTTTCTGCAGGGTCAGCAATATGGTGGTGTTCAGGGCAGGGGGCGGGGGCGGAGTCACCCTCTTCCTAGGTACACTTCACTTCCGTGTTATTTTACTTGCATTTTCTGCCTCTCTGGTCAAACTCACTTGAGCATTGAGTTCACAACGTGAGTCACTGTTGTGGACCGTGAAACTGGACATTCTGGTCCATACAGGAAACTGAGTTGAGTGGTCAGCCAGAGTGCACTGTAATGGCTGTAGGACTTCCTGAGTACTCTCATAACGGGACACAGCAGGACTAGTTCTTGTTGCTCGAGGGTAGTTAAAACTCTGTGTCAGCCAGGCAGTGGTGGTGCGCACCTTTAATCCCAGCACCTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAAAAAAACAACTCTGTGTCAGTCACAAAGCTTCTGAGTGTACACCTCATGATCAATTGTCATCATCTTCCCTCTCCCCTCCTCGTCCTGTCCCTCTGTCCCCCACCGTTACAGGGAAGACACGATTAAAGCTAACTGGGTTGTGGGGGTCCCCAAGCCTCCTCTGTCCTTAGCTGAGTTATCATGGGCTCCTGTGATCTGGAGCTTCAGCTGTCTATCATGCCGGTTCTAACAGGGTGCAGTGGCCTCCTCCCCTTGGGGAGAAAGATCTAGCTCCACGTTTTCAACTCTGGATGCTCTGAAGGTGGGGGCTGGTATGATCTTTTCATAGTCATTATAGTCTTAGTCATTATAGACTGAGTCTACCAATCAAGAAAGACCCATGCCTCTGCCCCCTTAATTGTTTATAATTTATTGACTGCTCATACACTTTTGGAGGCTTCAGGATGTAATTTAATTCATCTGTTATTTGGTACAGTCTTTATGACAAGGCTGAAAAGAGTCTTCAGTTATCCTGTTATTAATAAAAGGAGCAAACAAGCCCCCACCTTCATCCAGGGCATCCGGAGTTGGAACCGTGGAGCTAGAGCTCTGTCACCAAGCAGAAGAGGCCCTGCAGCCTGTTAGAACCTGCACAATGCACAGGTGATGCTTCTACCAGACGCAACTTTCATCTTACTCAAGCGTCTTGGCTTAAGGGCCTAACAGGTTACTTTTGTGATAGCACCAACCAGCTCCTGTCATTGCTGGAATACGAGTCCCTCCTGTTCTGTCACTTGACTATGGGGAGCTGGAAGGTAGCCTGACAGTTATCTCGCTAGCATTGTTTAAGACAAGGACTTATACAGAACTTCAGACAGGTGGTGTGTAGCTGAAACACCGGCAAGGAGCTTCACCAGCCTTTGACCAATTTAATGGGTTAGAAGTAGAAATAGTGTCTTCAACTCTCTTGACCCATCAGCTCCCAATAATGACACAGTGACCTCTTATTATTTATGAATGCTTAGGGCTTATAGCTTACGTTTGTTTGTTTCCAACTAGCTCATATAACTTAATTAACCCTGTCTATACTCGCCCACATTTGCAACATGGCCCAATTGCCTCTCCTCAACCCCTTATGCCTAATTTTCTCCATGTCTGGTTGGGACCTGATTCTTTCCCAGAGTTCCTACCTCTGCCCAGAAGTTCTGCCTATCCTCTCCTGCCTAGCTATTGACCATCAGATCTTTATTACATCAATCAGAAGATGCCTTAGACAGGCAAGGAAGGACAGAGATGCACAGTGTACAAAAAGATTATCCCAACAAAATGGGAAGTGGATCCAAGTGGGTCATCCCTGGGCATTGGACTAACCTGCCAGGGAGGTCTCAGTGAGCTGCCCTCTGCTGCACTCAATTGAAGACCCTAAGAAAACTGGGTACCTTCATGAACTCTGAAGGAAGAGACCATTTCAGAGTCACCAATACATTAAGTAGGTGTTCTCTCCAGATGTTCCAGCAGCTGCGTGGAGGGGAGAGGAGCCAACTCAGATCCATCAAAAGGTGAAAAGATGCTCTTTGAGAACCGGGGAACTCCAGGGCTTAAGGTTAGAGTAACACTGGTCCTGTCCCTTCAAGGTCTTTGCTGTGAACTAGGAGGGGGGTATCGTTGACGTGTGGGATCTTTATGCCCTAGATTTGCTCCCATCTTTTAGAAAAAAATCTTGATTATATAAAAATAGCTAAGAGAACATACTGCTTTTCCAGAGGACCCAAATTCAGTTCCCATTGCCCACATAAGGTGACTCACAACTAACTGTCTGTAACTCGAGCTCCAGGGGATTCAATGCCTCTAAGCACTGTGGACACCTTCTCTGTGTCTCTGTCTCTGTCTCTCTCTAACACACATTTTATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAATGTATATATATATATAATACACACATATATAAATATATGTATATACTTAGAAGCATATATATGTGTATATATACACACATATATGTGTGTATACTTATGGTGGATATCTAATTCCACATACCTTAATTTGTCGAAACAATTCCAACTTCAAGATACTATAAAAGTTCAATGGCCCATTTAAGAGTCAAGTGTCTTTTTCATATAATGCACACTTAAGCCATATTAGACTACAGTGTTGTGCCCCAACAGGAAATTTTATATTTAATTTTTAATAGCATGGATTTTTTAAAAATGTCTGTTGCAACTAGTTCAGAGACTTCAAGCCCATTCTAGGCAGGTCCAGTCATGGTCTTGATTCCTTCCCAGCTGGGGCTCAAGAGGCACCCCCAGCAGCTGTGTACATTAAAACAGCCAACAGAATGTCGGCCAGCTCAGTCACAGTCTGAGTGACGCAGAGAGGAAGAGGCATCTGGAGCTGATATAGATGTCCTCACCACCAAGAAGAAACAGGGTAGTGGAAAACCAGATCCCTCAGTCCAGAGGACCTTTAGGTAAGACTTACCTTTAGGTAAGGTAATGTCCAGGACGTTAGGTAAGAATCAGGGTTTCTCCACACATAAGCAGATCAGATCTCAAATTCAAATAAATCAAGACCCCAAAGCCACTGCAGGACCCAAAACCCCTATATGATGAGGGATTTTAAAGATAGCAACAAGCATTTAGTTTTGTTCCTCAGAGGCGAGAATCTTCCAAAGTTGCTCCTGGTATCCCAGGGGACCCAAATGTAGGACTAGGGAGATGGAGGATGAACTGGGGTTACTAGCAAGCTGGTGTTACCATTTGAGGACTAACCTGTTCATTGTGCCCAACAATGCCTATGCTGATTGTCCTAGCTAGCCCTAATTGTCAACTTGACATAGCTTAAAGTCATCTGAGAGAACCCTCAATTGCAGAGCTGTCTAAACCAGGTTGGCCTGTGGCCCTGTCTGTGAGGGATTGTGCTGGCTTTTGAATGATGTAGGAAGGACCGGTCCACTGTGGGTAGCACCATCCCTAGGCACCAGGGCCTGGTCTATATAAGAGAACTAAAGAGTGAGCCAGTGAGCCAACCAGCAAGCAGTTATTCCTCATTATTTCTGCTTCAAGCCTGGCTTCCCTCACAGATGAGTTGTAATTTTCTCCCCCAAAGTTGCATCTGACAAATGCGCTGTGTCACAGCAGCAGAAAGGAAAATAGCCCACTGCTACCCAGTGATGGTGGTTTAAAGAGGCTGGCAGCCCTCTGCCGGATTTGTCACCGTTTTGGTGCTTGTAGGTCTTGACTGGTTCTGCCCATAGCCTCCTGACTCTTGCTTCCTCATGTCATGAACATGAATCCCACTGTTTCACTGGCTTCCTACAGCTGCCCCTTGCTGCCACCAACCCTGCCAGGTTCCTTCCTCACACTGGCTTCATTCTTGTAATGAGCCTGCCGTTCTGCCAGCCACTGTCAGAGGCACTGGAGATAAAACCATGAGGTGGGCTCCCAGTGGTTCTGATAGGTGGAGCATGTGGCAAACCTGCACACTGTGGGAGAGGGCCAGGAGCTGTGGGAACTGGGAAGCAGAGGAGGAGGGGCAACAGGAAAGGGCTACTGAAAGGGTGACCAGGGACAGCCTCACTGAGCCAGTGACACCTCAGCAGACATTGTTGGGGAGGGGGCGGGGGTCTTCATGCACATCTCAGGGAAGAACACTTCAGGCCACATCCCTAGGCTCAGCTGGTGACAAAGGAAGGAAGGCACCCTATGTGACTAGAGCTGGGGATTTCAGTAAAGGAGATGAAGGTCTGAAGGAGAGATCACACACGAGTCTGACCACTGTCACCTCTCTGCAG
Seq C2 exon
ATCGACTACCAGTACTCAAGCCTGCCGGTCTCCCTGAGTGAGGGTCTCTTGCGTGTGCACCAGAGTGGAACACGAGGTGTGCTAGAACTGGACTTTGGGCTGGTGGTCACCTATGACTGGGATGGCCAGCTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAGGTGTCTGGGCTGTGCGGCAACTATAATGGAGACCCTGCAGATGACTTCCTCACGCCTGATGGGAAGCAAGCTCCTGATGTTCTAAATTTCACCAAAAGCTGGAAGGTGAATGATCAAGACCTCTTATGTGATGATGGCTGTTATGGCAACTGTCCGTCTTGCATCCCAAGCCAGGCCCAGCTCTTTAAGAAAGACCTTTTCTGTGGCATGCTAACTCTGCCCTCAGGCCCATTTGCTGACTGTCATCAATTTCTGGACCCCAAGCCTTTCCTGGAAGAATGTGTATATGACATGTGCGTGACGGGAGGGGAACGTCTCACCCTGTGCCGTGGCCTCAATGCCTATGCACAAGCCTGTGTGGACCTGGGCATCTCTGTCCGCGAATGGAGGTCACGAACCAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078776:ENSMUST00000150948:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=67.5)
A:
NA
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types