MmuINT1008094 @ mm10
Intron Retention
Gene
ENSMUSG00000078787 | Cyp2t4
Description
cytochrome P450, family 2, subfamily t, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2686296]
Coordinates
chr7:27156516-27157394:+
Coord C1 exon
chr7:27156516-27156676
Coord A exon
chr7:27156677-27157217
Coord C2 exon
chr7:27157218-27157394
Length
541 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
AGAGAACCCTGTCTCTCCAGATA
3' ss Score
4.64
Exon sequences
Seq C1 exon
GAGCTCCATTTGACCCCCAGCAGCTACTGGATAGTGCTGTATCCAATGTCATTTGTACTGTGGTTTTCGGAAAGCGCTATGACTATGGGGACCCAGAGTTCCGGAGGCTCCTAAACCTCTTCAGTGACAATTTCTGTATCATGAGTTCCCGATGGGCTGAG
Seq A exon
GTGAGAGGATGGGCTCCAATTTCTCATTTTACATGCAGCCTTGTGCCAAATTCCAGGGGCATAGCCCTACCTACAGTGGCTACAGATTTAATGACAAAGTTCTACAACACACAAAGTCCTGATTTAATTTTTCCACAAAGAAACCATGGCCTTGTCCAGGGCCCTATTAAGACCATTTCAGCAGGGTATGATGGCACATGCCTTTGATCCCAGTACTGGGAAGGCAGAGGCAGGAGAATCTAATTTGAGGCCAGCCTGGTCTACATATAAAGTTCCAGGTTAGCCAAGGATAGTGGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAGGAGAGGGGAGGGGAGGAGAGGTGTGGAGCAGAGGAAAGGAGAGAACCCTGTCTCTCCAG
Seq C2 exon
ATATATAATATGTTCCCATCCTTCATGGACTGGATCCCTGGGCCCCACAACCGAATATTTAAAAACTTCCAAGAGCTCCGACTCTTCATCTCTGAGCAAATTCAGTGGCACTGGCAGTCACGACAGACTGGGGAACCCCGTGACTTCATTGATTGTTTCCTCGACCAAATGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078787:ENSMUST00000108385:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCATTTGACCCCCAG
R:
TCCATTTGGTCGAGGAAACAA
Band lengths:
334-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types