MmuINT1008125 @ mm10
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115574700-115574966:+
Coord C1 exon
chr4:115574700-115574764
Coord A exon
chr4:115574765-115574906
Coord C2 exon
chr4:115574907-115574966
Length
142 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GAGGTGTTTGACCCTTCCAGGTT
3' ss Score
7.04
Exon sequences
Seq C1 exon
GTGTCCAGGTCACACTCTCCATTTATGGTCTCCACCACAACCCGAAGGTGTGGCCAAACCCAGAG
Seq A exon
GTAGGAAACCCCCAAGGAGAGCAGAGAAGTTGGTCACAAGACCAATAAATACATCCTATTGTTCCCACCTCTGGGCAAATTGTCCCCTTTTGGGTTGCAATTGACCTCTACCTGTTCTGACTGAGGTGTTTGACCCTTCCAG
Seq C2 exon
GTTTGCACCAGACTCTCCCCGACACAGCCACTCATTCCTGCCCTTCTCAGGAGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712:ENSMUST00000030480:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(0.3=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGGTCACACTCTCCA
R:
CTGGCTCCTCCTGAGAAGGG
Band lengths:
125-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types