MmuINT1008128 @ mm10
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115640305-115641661:-
Coord C1 exon
chr4:115641617-115641661
Coord A exon
chr4:115640433-115641616
Coord C2 exon
chr4:115640305-115640432
Length
1184 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CATCTCTCCTCCTTTCTCAGGAA
3' ss Score
10.47
Exon sequences
Seq C1 exon
ACCCGAAGGCTGCATATGTGTATGACTTCTTCCTCCAGTGGATCG
Seq A exon
GTAAGTAAGCGTCTATCTTTCTGTGTCTTCTCCTCCCTCCCTTGAGCTAAGTGACCAGAATCCTGCCCTGCCACAGTGGTCACCCTTCCATTGGCCTGCCTGTCCTAAGCTTAGTGTCTCTGTGGGGAGGTGGGGGAGCAATAAAAGAGCTTCTACCTGTCAGTGGATATTCTTGCTGGACATTCCACTTTCCTCCCAAGCAGAGGCAAGGCAATGTGTGCTTGAAGAGTGGCTTCCTAGAGGGGGAAACCCTAGAGTTGATCCTGTAGGATATTATATTGGCAGTGCTTTCCAGAAGAAGGGTCTGAGAAAAGGTCTAATAATAGTAGGGCCATGGAGGCTGCAAGGTATCTGAGAGACTTGAGTAGAATGCAGATTTCTATTAGTAGATTAGGCTAGGCAGGGAAGATGGGTCAAGTTTAGCTGTTAGTATGTGGACTGATGTTGATGATATTGTGTGCCATTGAGTCATCTTCTTTTAACTGATTGATTAATTACTTAATTTTGAGACAGGGTCTTACTATGTTGCCTTAGTTGGCCTATGTAGAACAGACTGGCTTTGAACTCACAAAGATCCACCTGATTCTGACTCCTGAGTGCTGGGATTAATGGTGTGTAATACCATACTTGGCCTTATTCTTTTTAAACTTCTATTTATTTGTGTGTATGTTTCTGTGGATGTAGGGCACTTATGGATAGGTAGCTGTGGAGGCAGGTTGAATGCCCGAGAAATGGACTAAAATGTGGTTGGGAGGTATTGTGTATGTGCTGGGAACTGAGCCAGGTCTTGTGTAAGAGCATTAAGGACTCTTGACACATCTCTCTCGAGTTCACTGTGCCTTCTTAACCCAAGGTCATATATGTCTCCCAACTTCCTTTAAAAAACAAAACAACAAAACCAAAACCAAAACACATGGCAATTTCCTGGGAGCTATGAAAGGGCTGGTTAATAGGGAGGCAACAATCCTAGACTATTGACTTAGTTAAGATTTGCTACCTTCTCCATGTTGGATACTAGCAGACTGGGGTGGGGACCAGAGTCTCTGCTGGGTCTTGTAGTTCCTGTCCCCCATCCATGTAGTGTTCCAGGCTTGGGAGTGTCAGAGGCTGTGATTGATCTCAGCTCTCAGGGGTAGAGTAGGATTGTCTGGACTCCACAGCCTCCATCTCTCCTCCTTTCTCAG
Seq C2 exon
GAAAAGGCCTACTGGTTCTGGAAGGGCCAAAATGGTTCCAGCACCGCAAGCTGCTCACACCTGGCTTCCATTATGATGTGCTGAAGCCCTATGTGGCCATATTTGCTGAGTCCACACGGGTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713:ENSMUST00000102707:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(18.1=100)
A:
NA
C2:
PF0006717=p450=PU(20.0=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types