MmuINT1008805 @ mm10
Intron Retention
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69453161-69453925:-
Coord C1 exon
chr11:69453776-69453925
Coord A exon
chr11:69453329-69453775
Coord C2 exon
chr11:69453161-69453328
Length
447 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
3' ss Seq
ACCCTCACCCCGCTCCCCAGTCA
3' ss Score
5.59
Exon sequences
Seq C1 exon
GGGACTTCCTGAAGGAGCCCAAGGTCTATGAAGACCTGGTAGACCTGACAGTATTGAAGACAGCCATGGAGACGGCCCTGAATGAGTACAATCTGTCTCCTTCGGTTGTGCCAATGCAGCTGGTGCTCTTCCGAGAGGCCATTGAACACA
Seq A exon
GTGAGCGCTCGCTGCCTCCTGCCCTTCTATTTTCCAACCTTGGTTTCCCCTCGAAGGCCACTCCCAAATCAAGTTCTAGACATCGTTTTCCTTTCAGGTCCGACCAGTGTGGCTTATTTATTTATTCATTTGGTTTTGAGACAGGGTCTTGCTGTGTAGCCCTAGCCAGCAAGCATATCGCCGGTTAAAGCAAACCGGTCTTAAACTTGTGACCCTCTGCCTTTCCCTGAGATTACAGGCCTACAGCACCACACCTATCCACAAGAGTGTTAAATGGGCAAGGTGTAGGTTAAGTGCTGAGTTGCCATCAGAGCCTTAGGCACCACCCTCTCCACTCTTACTTCTTGACTTCTCTAATTCAGCCTCAGAGGTTTTGATCCCTAGCCCGGGGCCTAGAAATTGCTTGGATTTATAAACCCAGTGCGTTACCCTCACCCCGCTCCCCAG
Seq C2 exon
TCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGTTGCTGGTGGGGATCGGGGGCAGCGGGAGGCAGAGTCTGGCCCGCTTGGCGTCTTCCATCTGCGATTATAACACGTTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237:ENSMUST00000035539:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.7=41.2)
A:
NA
C2:
PF127802=AAA_8=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTTCCTGAAGGAGCCC
R:
CGTCTCGGAACTCCTGTTTGC
Band lengths:
318-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types