MmuINT1010676 @ mm10
Intron Retention
Gene
ENSMUSG00000070880 | Gad1
Description
glutamate decarboxylase 1 [Source:MGI Symbol;Acc:MGI:95632]
Coordinates
chr2:70587123-70587402:+
Coord C1 exon
chr2:70587123-70587238
Coord A exon
chr2:70587239-70587322
Coord C2 exon
chr2:70587323-70587402
Length
84 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CAAGCATCCCTTTGTTGCAGAGT
3' ss Score
6.61
Exon sequences
Seq C1 exon
GGGGAGCCATATCCAATATGTACAGCATCATGGCTGCTCGTTACAAGTACTTCCCAGAAGTGAAGACAAAAGGCATGGCGGCTGTGCCCAAACTGGTCCTCTTCACCTCAGAACAC
Seq A exon
GTGAGTTGGGGGCTCTGGCGTGTGGGTTGTGATGGTTTTCAAGGGACTATGCAACTTTTAACCTCAAGCATCCCTTTGTTGCAG
Seq C2 exon
AGTCACTATTCCATAAAGAAAGCCGGGGCTGCGCTTGGCTTTGGAACCGACAATGTGATTTTGATAAAGTGCAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070880:ENSMUST00000094934:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.1=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCATATCCAATATGTACAGC
R:
ACATTGTCGGTTCCAAAGCCA
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types