MmuINT1012532 @ mm10
Intron Retention
Gene
ENSMUSG00000087283 | Gm13580
Description
predicted gene 13580 [Source:MGI Symbol;Acc:MGI:3650460]
Coordinates
chr2:60411525-60412008:+
Coord C1 exon
chr2:60411525-60411717
Coord A exon
chr2:60411718-60411846
Coord C2 exon
chr2:60411847-60412008
Length
129 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCCTGTGCTATGGACGCCAGTCA
3' ss Score
1.78
Exon sequences
Seq C1 exon
GGGAAAACGACTGGTTAACTTTGCTTCTCCTTGTTTGTGGTTGTTCTGGGGTGCTCCTCTGGGGTTCTCATCTCACCTCCCTGCTCCTCCTTGTTTAACATCCTGATTTCAGAGCTTCCCTGGGCACCGCCTCCCTGCTCCAAACACCAGCTGGGATTCCAAAGCAACAGTCTTACCTCCCTGGGTGTTTGAG
Seq A exon
GTAAGTATGGAGACTGTTTGCCCTTCTCTGATTTCCTGGTCAAATAACAAGTTCTCTTTGACAGTCCCTGGGTCTTACTCACTTGACTCCCTCTAACCTCCCCCTTCTGCCCTGTGCTATGGACGCCAG
Seq C2 exon
TCACCCTGCAGGCAGCATGTGCTGCTGATGAGAGCTCGGGATTGCAATCATGAATGGTCTTGGATTCCAATCCTGCCATGTGTCAGCTGTGTATCACCGACGACGACAACACAGAATGTTTCTGTCTTGCTTTTGTCATCTGTAAGATGACGTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087283:ENSMUST00000131457:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCTGGGGTTCTCATCT
R:
CGTCGGTGATACACAGCTGAC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types