MmuINT1013752 @ mm10
Intron Retention
Gene
ENSMUSG00000086741 | Gm15816
Description
predicted gene 15816 [Source:MGI Symbol;Acc:MGI:3802114]
Coordinates
chr8:23138794-23140243:-
Coord C1 exon
chr8:23140113-23140243
Coord A exon
chr8:23139576-23140112
Coord C2 exon
chr8:23138794-23139575
Length
537 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTGAGTTGGTATTCTCTCAGCAT
3' ss Score
1.99
Exon sequences
Seq C1 exon
AGGCTCTGCTCTTACCTTCTTGGTAACAATGTTGCCCTGTTCATCTGTGAATTGTTCCTCCGTCACCTGCTCTCCTGGAATATTCTGAAGCTCATCCCCCTGGAGTTAGAAGAAGGGAAAGACCCAGACTG
Seq A exon
GTAAGTGGGGTTTTCCTAATAAGAGCAGAAGAGAAGGAGAGGCCAGGGAGCGGCAGCCACAGCCGCATCCAATCAAGCCCGAAGTTCAGCCAACAGCCCCTCCACCCCCAATCCCCGGCCAAACAAGGGCTCCCATGCTCTCCCGGCACCATGTTGGGTCATGAGCCCTGAGACAGGCTGGAGCCAGGACCCACAGGAGCTTTGTGTGCCTGATCACTGCAATGGCAACAATACGGGGTGATTATGCAAGTTCCCAGAGCCCCTCCCCTGCCCCCCAGAGAAGTAAGGGAGAGAATGACAAAGACATCACAGCCCTGGAGGTGTCTTGAGTTCTGACGTTGGTTGTACACGTGGAATAAGAGCAGACATCCTAAGTCCCAGAGCTGAGCTTCCGCCACTACCCACTGCTGGGTACTGGGTCAGTTTTGAGCAGGTTCCACATGTGGCTATGTCTCCCAGCAGGCTGCAGCAACCAAAGAGGCCTCCCTGCCCTTATATGCTTGCCATTTCTCCTGACTTGAGTTGGTATTCTCTCAG
Seq C2 exon
CATCACCATGCATGAGCCACAGACCGTCCTCTGGCACCCGAGGTCCGGCCCCCGCTACCCTGCCGCTTGCCTGGTGTTACCTTCAGGAAGACCCGTCGGCGGACCACCCTGGTAGAGATGGTCTCCTCGTCATCGCTCAGGCCCTCGCTCTCCCCCAGCTCCTTGTCCAGTTCCTGGTGGATGTGCTTCAGCACAAAGCACAGGGAACCCTTGACAATATGCATCACATTCTGACAGCTGACCAGGAAGAAGCCTAACAGCACCAGCGTGACCAGGAGCTGCGTGATGAAGGTCCACATCCTCCTCTCCTCTCTCTCCTCACCAGCCTGGCCCTCCAGGGACTGGGGACACCAGGGGCCCAGCTGCTGTGGAGATCCAGTTTCTCATTCTCCTCTCCGACGCCTGAAGTCCCCAGCCAGCCCTTCCATTCCGTCTCTTTATCCTCTTTTCTCTTTATCTCCTGTTTATTCTAAACGGGAGACCAAACGGTCTCTCCTGCGCGACTCTCTTAGCTGGGACGTGGTGACCCAAATGTCCTTCCTGCCAAACGGCTCAGGATCTCTCCTCACACCCCAGAGGACGTCAGCCTTTTATAATTTTAGTAATTTTAGCTCTCGAGCCAGCTGCTAGAGCTGTCCAACTGGGATGAGAGGAGACAGCAGGTGCTGTATCTTGGTCTCAGGAAACACATGTCAAAGTGACCGTAGAGAGGGAAACCGGGCTTGTCTAGGGTGCCAGAGGAAAAGTCTCTCATTCAGGGACTCCATAAAACAAGGTGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086741:ENSMUST00000141930:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGTTCCTCCGTCACCTGC
R:
GCTGGTGCTGTTAGGCTTCTT
Band lengths:
349-886
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types