MmuINT1014689 @ mm10
Intron Retention
Gene
ENSMUSG00000109372 | Gm19410
Description
predicted gene, 19410 [Source:MGI Symbol;Acc:MGI:5011595]
Coordinates
chr8:35806997-35807694:+
Coord C1 exon
chr8:35806997-35807161
Coord A exon
chr8:35807162-35807493
Coord C2 exon
chr8:35807494-35807694
Length
332 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ATCCAGCTCTTTTCTTTCAGATA
3' ss Score
8.42
Exon sequences
Seq C1 exon
ATGATGCAGCTAACACAAATCAAGAGCCCCTTTTCAGTGGCTGTGTTTGAAGATAAAGTCTTCTGGTCTGACCTTCAGACAAGAACAATACAGCATGCGGAGAAGATGACAGGCAAGGACAGGGCTGTCCTCATCAAGCGTTCTGGACAGCCCTTTGGACTCAAG
Seq A exon
GTATGTGGAGTACTCTTTAAAACATCTCCCTAGTCCTCTTGAAAAAGGCTATGTCTATGAGCTACCCCAAATCACCAAGTTTACAGGCACCATCTACAGCAATTAAGAGCACTTTTGGGGCTGAGACTGTAGTTCAGAGGTAGAGTTGTACATGTTAAGCATGCATGAGGCTCTGTGTTCAATGGGGGCACACAGAAAAAGAGAGAAGGGGAGGAAGGTAGAAGATAGGGGAGAAGGAGGGAAAGAGGGAAGGAAGGAGAGGAGCGAAGAATTGGTTGACTTTCTATTTGAAAGGATTTAGCACTTAGCAGCATCCAGCTCTTTTCTTTCAG
Seq C2 exon
ATAATGCATGAAGTCCTCCAGCCTAGGTCTTCTAGTCCTTGTCTGGACATAGGATGTTCTCACTTGTGCCTTCTGAGTCCACGAGCCAAGGGAAGTTGTCGTTGTCCTGTTGGCCTCCTGCTGGCAGATGACGGAATCACCTGTGTCTCCCTCCAGGAGTCTGGGTTTGTGTTCCTGGTATTGCCTACTGTTCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109372:ENSMUST00000207505:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=52.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCCCCTTTTCAGTGGC
R:
CTGGGTGAGAACAGTAGGCAA
Band lengths:
346-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types