MmuINT1014691 @ mm10
Intron Retention
Gene
ENSMUSG00000109372 | Gm19410
Description
predicted gene, 19410 [Source:MGI Symbol;Acc:MGI:5011595]
Coordinates
chr8:35808859-35810362:+
Coord C1 exon
chr8:35808859-35809405
Coord A exon
chr8:35809406-35810236
Coord C2 exon
chr8:35810237-35810362
Length
831 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
AACTGACCATCTCTTCCCAGGGC
3' ss Score
7.84
Exon sequences
Seq C1 exon
ATCTATTTGAAAAATCTTAAGACGTCACAACAAACAACTGTTCCAGAACACAGAATACTTCCCTTCACCAGTGTCAAACAGCTGGCATCAGTGGATTACCTTGTCCAGGAAAAGGCCCTCTACCTGTCAGAGCTCAACACCAGTGACATCAGGCTACTGAGGATGAAAGAACCAGGGATACTCTCGTGGCGGAGAGTCATCTCTGTGAAGGGGACGGTGATTGACTTTGCCTTGGACTGGATGAGTGGAAACATATACTGGATCGACACTGATAATCCCTACATCAACGTTGCTTTCTCAAATGGCCAGTACCCCATTGTTTTGCTCAGTGAAAACCTTTACCGCCCAACTTCTATTGTCCTCCACCCACCTACTGCAGCCATGTGCTTGGCAGACTTGGGTTCACAGGATGACGGGAGACATGGTTCCAGCATTGAATGCGCCTCTATGGATGGCAGTGGGAGAAAAGTACTATGGCTGCAGTCCCAGGTGCCTGTGGGCCTGGCCTTTTCGGATTCAGGGACCCGAGTATACTGGGCTGATACTG
Seq A exon
GTAAGCAATTCATATCTGAACCCTAGATATGAACCTCACAGACCCTGTGCTGAATAATGAAGTTCTGGTCAATGATCTTCAGCTCTAACCTCAAAGAACTTTCAGATCTTCTGAATCTGCCAACACAGTAGAGACAAATAGATGCATCCCTAAGTAGTACAGTATAACCCACAGAGTCATGTGGCTGCCCCTTTGTAAGGATAAGACTGAAAACTCAAAATATGTGGATAATAATGCTGGGACAATGGTTCAGGGGGACAGCACCTGTCTTGCAAGCATGGGGACCTAGGTCTAGATCCCAAGAACCCCTGCAAATGTGGGCATAGCAGCACATACCAGTTGCCCTGTGGTGATATTGGAGGTAGGAGCTAATGGGCTAGCTAGCCTGGTATGTGAGGATGTAAACAATAAAGAGCCTCTGCTTCAAACAAGATGGGAAGTTAAGACAGAAACCTGGCTTTGTCCACTGATCTTAAAACATATGCTGCGACACAGGATACCTGCACTCATATGTAAACACATGATTACATACTTGCTCATCATGCACATACACATATGCATCACATTTTATATATATATATATATATATATATATATATATATATACATATGCATCACATTATATATATATATATTCATAACAATATATATACATATATATATATATATATTGTTATGAATCACTGTTATGGAGAGGTGAATGACGGAGAATCGATTTCAGGTTCCAAATGACAAACAGTGTCATCCTGAAGCTGGAACAAGACATAACAGTCTTCAGGATGTAGTATAGCTATTAAGACTACATGAAATTAACTGACCATCTCTTCCCAG
Seq C2 exon
GGCAGGGACTTATACAAAGTATTCAACTAGATGGCTCAAGATACAGAGTGGACCACCAAGGACTTAAGGGTCTTCACCTCTTTGCATGTGGTCAAGACATGATGCTGTGGACAACCGTTGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109372:ENSMUST00000207505:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=22.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAAACCTTTACCGCCCA
R:
TCATCAACGGTTGTCCACAGC
Band lengths:
344-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types