MmuINT1014863 @ mm10
Intron Retention
Gene
ENSMUSG00000092593 | Gm20492
Description
predicted gene 20492 [Source:MGI Symbol;Acc:MGI:5141957]
Coordinates
chr10:127288514-127289681:+
Coord C1 exon
chr10:127288514-127288577
Coord A exon
chr10:127288578-127289459
Coord C2 exon
chr10:127289460-127289681
Length
882 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACAACCTGGTCTGTCTTTAGGCC
3' ss Score
9.15
Exon sequences
Seq C1 exon
CTGAAGGGAGCGAGGTCAGGAAGGCAGAAGTCAGGCACTTTGGGAGGAGAAATGGCGGGGGCAG
Seq A exon
GTGAGGGTGCGGGGCTGTGGATGGGGCCAGGGAAAGGGGCCGAAAGGACGCGGAGGGGGCAGAGGGTAGGGACAGAAGGGGAGGAGAGAGAAGGGAGGGGGAGGGGCGGGGGGGCCGGGCCCCGCACTCACCGCGGCCCATGGTTCGGCTGGCCCCGCCCTGCGCAGTCGCGGCCCAGAGGGTGAGTGGGAGGGGGTGGGAGGTGGGTCGGTGGAGCCCGAGCCTCCGGTACGGCCCCGGCCGGTCTTAGCAGGAAGCGCCGCCGCCGCCGCCGCCGCGGATCACCGAGCGGCCTCCCGCGCATGCGCCATAGGGGCCAGGGGCAGCCCTGGGGATTCCGTTCCCAGAAGGCACCGCGCAGGCTGCTACCGCCGCCGCCGTCGCTGCCGCCGCCACCGCCGCAGCCGCCGCCGCCGCCGCCGCCGCTGCCCGGACGGGAGAGGGGCGGGGCCGGGCCCCCGCCCAGCGGACAGCAGCGAGCCAACAGGAGGGGACGCAGTGCGCATGCGGGAGCGCGCCTACCCCTCCCCCACAACCCCCCATTAATCCCCAAGAGAACAAACACCCCACGCGGCCCCCCCCCACCCGCCCTCCGCGGAAGGATCTGGGCCTCTTCCCAGGCCACTGGTGGCCAATCCCAGTCCTCCCTCGGGAGGGGCCCCTTCCGAAGCCACAATCTGTTGGGGGAGTCAGGAATGTCAGGTCCGGGAGGGGCCAGCCCTAAAAGATGAAAGTCGCGACTTGCCCTGCCCCGCCCCAAAGGCTTCCCGGGTAGTGTGCAGAGACTTGACCCGCCTCTCCAGGTCAACATGTCACAACACGACCTCAGCCTGTCAAGTCACATGACCTCTGCCTGTCACTGACAACCTGGTCTGTCTTTAG
Seq C2 exon
GCCAGGAGAGACCATCTGGTCCAACCCACCCCCCACCTCTACTAACAGAAGGGGAAATGAAGGTCTGGAGCGAAGGAGCAGTCTGGCCAAGGACCTGTCACCGTCGCACCATCCAATAGCAACCGGTCTTGGTTCAGTTTCTACTTAAACTCTGGCTTGCCCCTCTTGAGTCTACGACAGACTATGTAATAGGCCACCACATGGCCTCTGTTTTCATGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092593:ENSMUST00000172591:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGGAGCGAGGTCAGG
R:
GTGCCATGAAAACAGAGGCCA
Band lengths:
286-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types