MmuINT1014870 @ mm10
Intron Retention
Gene
ENSMUSG00000092371 | Gm20511
Description
predicted gene 20511 [Source:MGI Symbol;Acc:MGI:5141976]
Coordinates
chr11:103190710-103192896:-
Coord C1 exon
chr11:103192661-103192896
Coord A exon
chr11:103190930-103192660
Coord C2 exon
chr11:103190710-103190929
Length
1731 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTCTGTTCCCTCTTCCCAAGGCC
3' ss Score
8.08
Exon sequences
Seq C1 exon
GCAACCCCGCCCCAACCCTTTTCTGGGATGGACCGGGATGTCCAGCGGAGAAGACTCCTTGGGAAGCCTGACCTGTCGCACACCCCCATCGTGGCCCAGCCCACACCAAAGCTTACCCTCAGGGTCTCCAATTCCTTGCGAGCCTGGCTTAGCTGCTTCTCCAGTTCAGCGATCTTGGCCATGGAGTCGTTCTCTGTGTCCCGAAGCCGCTCTGTCAGCTGTGGTACCAGCACATG
Seq A exon
GTGAGCTACCACCCGCGGCCAGGCACTGGCACCGCCGGTGAGGGGGCGGCATCAGGCAGGCCTGCCTGGAGGGCTGGGGGAGGCTCCCACATCCGCTTGGCCTAGCGTGCCAAGGGTGGGCCGAGCCTGGCACCTGAACCCATATAAATTAGGAGGGAAAACCAAGGCACTAGTGCGAAGAGAGGTGGTAGAGGAGAGGGTTGTGCTGAGAGGCACCACAAGACCCAATTCACTCGATTCGAGATTTAGACTCTTCTCAGGGAGAAGGTGCCTGCCTTGCGCACAAGTCCCACACAGCGTGGGCGCTCCCTAAAGACTCATTGAGAAAGATACCAAAAGGATGCTGGATTCAGATTGAGGGCGAACTCAGGCAGACTGCCGCTCCCAGGCCACACCCAGAACTCTGCCTTCCATTCAGTACTTGCTACACACACAAGAGGAGCCCACCCTAGAGCAGCCTTCCTGTGGGCCTACTGTGTGATAGGCAGGCTCTCACCGTTGCCACCTGCTCCTGCAGTTCCTCCATGTGCTCCAACACTGCATTCTTCGTCTCTGTCTCCTCCAACAATGTCCCCACATCAAAAACGTTGTCCAGATACGCCTGGATCTGCACCTGCAGCTTGTCACTCTCAGTGAGCCGGAGCCTCTGTCCCCAGACAGCAGGAGTAGGGTGAGGTCTGAGGTGGTGGCGGGGAGGTCTATCCAACCACCACCACTACCCGGAGGAAGGTACTAGGACTCTAGTTTGATTTTTATCTTGACTGGTATAATTCATGAACCACACAATTCACTATTTTAAGGTTACTTCTTTCTCAGAAGCTCGGTACCCAAGAAGGAAACCCTAGACCAGTTAGGTTCCTTTCCCATTATCTCCCCCCAGCTCCTGGCTGCTATGAATCTTACTTCCTCCTGCTATGGGTTTAGTCATTCTGGCCATTCCTTTCTGTATTCTTTTTCCTTTTCTTTTCTCCTTTCCCCTCTCCCTTCCTCTTCCCCTCCCATTCCCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACATGGGCACACACACGTGTTTCCAGTCAAGGTCTCACTATGCACCTCTGAGTGTACTGAAACTTACTCTGTAGACCAAGCTGGCCTCAAACTCACAGATATCCACCTGCCTCTGCCTCCATGGTGCTGAGTGAGATTAAAGATGTTTACCACCACCACCTGGCAACATTTCTTATTTTTAAAGGTCATATAATAGTCAGCTTTTATATTATACATATGTGTGTGTCCCTGTATGAGTTTATGAACACCACATGAGTTCAGGTGTCCTCAGAGGCCATCTGATCCCCTGGAACTTGAGTTACAGGAGATTGTAAGCCACCAGATGTGGGTGCTGGGAACAGCAGAGGGTCCAGGGACCTGGGTCCTCTCCAGGAGTAATAAGTGCTCTTAATTGCTACATAATCTTTCCAGCCCTACACTTGGCCTCTTGCATCTAGCTTCTCTCTCAAGGGTCAGACATGTTGAAGCCAATGCCTGACTGCACATGCTTGATCCAAATGTATCACATTCTATTGCACGGCTGTACCAGCCTTGCCCCCTCTAACTGTTAGCCAGTCCTAGCTTGGTTGGGGAAATCCAACCCCAAAGGCCTCACCCCTCTAGAAAGTCTCCTAGAGGAACCAGACCAGAAGCTGTGATTTCTCTTCTCACGAGTTCCTCTGTTCCCTCTTCCCAAG
Seq C2 exon
GCCCAGACCTCCAGCCTGAGCCAGCTCCCCCCTCTGTCCAGTATCTCTGAGTTCCCCATCACCGGCTGAGATCGGAGCATCCGACGGGACTGATGCTCCTGTGTCAAGACCCAGAACCACCTGAGCCTGTTCCAGGACTTCGGTGACAGATGTTATAGTATCCGTCATGTACCAGGGGCTCCTCTACACATCTGGAGTCATTGTCACCTCTGTGATTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092371:ENSMUST00000174079:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTGGGATGGACCGGGAT
R:
GAACAGGCTCAGGTGGTTCTG
Band lengths:
350-2081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types