MmuINT1015129 @ mm10
Intron Retention
Gene
ENSMUSG00000074735 | Gm21994
Description
predicted gene 21994 [Source:MGI Symbol;Acc:MGI:5439751]
Coordinates
chr2:150254518-150255591:-
Coord C1 exon
chr2:150255430-150255591
Coord A exon
chr2:150255346-150255429
Coord C2 exon
chr2:150254518-150255345
Length
84 bp
Sequences
Splice sites
5' ss Seq
GGAGGTGTC
5' ss Score
-30.95
3' ss Seq
CTGGAGTGAAATCCTATGAGTGT
3' ss Score
-19.72
Exon sequences
Seq C1 exon
TGTGAGAAAGCTTTCACACGTGCCAATTGTCTTTGCAGGCATGAAAGAAGTCATACTGAAGAGCAACCCTCTGAGTTTATTCAACTTGGGAAGAAAGCCTATGTATTTCAGAGTCATAACCAAAGACATGAAAGAATTCATACTGGAGAGAAACCCTATGGA
Seq A exon
GGTGTCCAACATTGTGAAGCCTTTGCATATAACAGTAGTCTCCAGATACATAAAACAACACTTGCTGGAGTGAAATCCTATGAG
Seq C2 exon
TGTAACCAATGTGGTAGAGACTTTGTATCTCACAGGTCTCTCCAAAGGCATAAAGGAGAGAAACCTTATGAATGTAATCAATGTGGTAAAACTTTTGCATGTCAAGGTGGACTCCAAATGCATAAACGAATACATACAGGAGAGAAAACTCATGAGTGTAATCAAAGTATTAAAGTCCTTGGATGTCAAAGTGGACTACGATATAAAAGAACACAAACAGGAGAAAAACCTTATGAATGTAATCAATGTGGTAAAACCTTTATATATCACAGTTATCTTCAAAAACATAAAAGAACACATACTGGAGAGAAACCCTTTGAATGTAACCAGTGTGGTAAAGCCTTTGCAGGAAATAGTCATCTCCTAAGACATAAAAGAATACATACTGGTGAGAAACCCTACGAGTGTAACCAATGTGGTAAAGACTTTTCACGTCGCAATTCTCTTCAAAGGCATAAACGAGTTCATACAGGAGAGAAACCTTATGAATGTAATCAGTGTGGTAAAGGCTTTGCATGTCAAAGTGGTCTCCGAATACATAAAAGAACACATACAGGAGAGAAACCCTATGAATGCAGTCAATGTGATAAAGCCTTTGCATGTCAGAGTGGTCTCCTGTATCATAAAAGAACACATACTGGAGAGAGACCATATGAATGTAATGAATGCGGTAAATCCTTCATACATCACAGTCATTTTCAAATACATAAAAGAACGCATACTGGAGAGAAACCCTTTGAATGTGACAAATGTGGTAAAGCCTTTGCACGAAACAGCCATCTCCTAACACATAAAAGGATACACACTGGAAAGAAACCCTATGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074735:ENSMUST00000063463:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(54.2=24.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(37.5=3.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGGCATGAAAGAAGTCA
R:
TGCCTTTGGAGAGACCTGTGA
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types