MmuINT1022050 @ mm10
Intron Retention
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12571900-12574354:+
Coord C1 exon
chr18:12571900-12572083
Coord A exon
chr18:12572084-12574213
Coord C2 exon
chr18:12574214-12574354
Length
2130 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTCTTCTCTTTGTTCTAAAGGTG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GTTACAGTTTTCTTTGGACATACAGACAACTTCCTCCAGAGGGCTAGTGTTTCACACAGGCACCAGGGACTCCTTTGTGGCTCTCTATCTCTCAGAAGGCCATGTCATCTTTGCCTTGGGGGCAGGAGGGAAGAAACTGAGACTCAGAAGCAAAGAGAGATACCACGATGGGAAGTGGCACTCG
Seq A exon
GTGAGTGCTGGGTTGGTGTAACAATGGTCTGAGCATGTTGAAATAATCCAAAATCCAAAATGATCCAGGCATTCTGAACAAAGACATAGAACCTCAAATAGAATATTTCATGTCCATCCTCTTGTAACAGATTACAGTCATTACAGTCAAAATACTAAGTATATTATGTAGAATTTCTGTCTATATATATATTAAACATGAATGAAGTTTCTGTTTAGACTTGAGTCCTATCCAGAGATACCTCATTTTATACACACACACACACACACACACACACACATATACATATACATATACATATATATATATGAATATTCCAAAATCAGAAAACAGACTATAATACTTATGGTCCCAAGCATTTCAAAGAAGAGATCCCCAGTCTGTACTTCGGGCTAGTATTGTTTCAGTGGCCAAAATTAAGAGTCCAGAATATTACCAGGAGCCCCACCATATGCACAAGGAGAACCTCTGTGGTTAGAGGTGCTGAATGCCTAGAATCTTGGGACAAAGACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACCATCACACACACCATCACACCATGTATGGATGGCAGACTGAATGTCAAGGAAGACTTAAACCATTGCTTCCATGATTCTCTCCCTAACACCCTAGGCTACATGGCTCCCCAGCCCATTTCCCATCCCTGCATACTGAACAACTCTCTACAGAACCAATTTCTGGACCTCTAAGCTCCTCCTCTTCCTCCTCTTCCTCCTTTTCCTCTTCCTCCTCTCATAGCACAAGCAGAAAGCCTTCTCTCCCTGCATCCTAGCATCCCAGCTCTTGCCTGAAGCCACCTCAGTTAAAAGTGTACATCACAAAGTTAAAGGGAAGTCATGTCTTTCTAATGATGGCACTGTTAATTAGAAAACGCAGGTGTATTAGTCAAGGTTCTCTAGAGTCACAGAACGTATGGGTAGTATCTATATAGTAAGGAAACTTGTTGATAACTTACAGTCTGTAGGTCAACTCCCAACAATGGTCAGCAGCAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTGCTCAGTCCCACTAGGCAAGCAGGCGAAGAAGAGAGAGTGAATCTTCCTTCTTCCAATGTCCTTATGTAGGTCTCCAGCAGAAGGTGGGGCCCAGATTAAAGGTGTGTGCCACCACACCTGGATCTGGGACTTGCTTTGTCCCAGATGACCTTGAACTCAGAGATCTCCCTGTCTTAATCTTCATAGCCACTATGTCTCAAGATCTCCATGCCAAGATCCAGGTCAGAAACTTGTATTTCCAACCTCCAGATTAGGTTCACAGGTGCACCTTCCAATTCTGGATTGTAGTTCATTCCAGATATAGTCAAGTTGATAACCAGGAATAGCCACTACACTAGGTCACCTAATAAGTTTCATTCACTGTGGGGAGCAGTGGGGTTAGGGTGCATCCTGAAGGAAGAGCAAGAGGGACAGCTGCTGGGTTGCACATGAAGTGAGAATGAAGGAAGAAGCCAGTTGGGCTAGTGGCAGGGCCAACAGAGAGACGGAAAGGGAGAGAGGGAAAGGGTGTTAGTGAGTGAGTAAACGAGTGAGCTGTCTGGGGACAATTTAGACTTCTATGATGTCACTGGAACTGGGAGTCTTTAGCTAAAGCCACCACCATGAGAGCAGACATGAATTCAAACTTGTAGCAGAGAGTGCTTGCCATTCATGTTGCAAGAGACACATCAGTTTCTGCCTGCTCCAGGAGCCATGCCCAGGCTTAGCCTCCCCTCAGCGCAGACCATTCACCTTTAGTCACAATCCATGCCCTTGGTTGTTCAGCCTTTGTTTACATTTCTAGATCCGTTGTATCTGTTGAGTGTTTCATTTTCAAGCTAGTTCCATAACTCTGCTTTCATCTCAGTTGTCTAGTACCTGACATAATCTTACCAAAAAATGTTCATGCTAATAAACAAGAGCCCGTTCTCTGCCTGTGAAGCTACTGAAGGATGGAAACCCCCCTCCCTTTTGAAGTTTCCTATGACTACTAGTAAAGTCTGGCACCAGTTGACAGAGGTACACCGTTGATTCTTCTCTTTGTTCTAAAG
Seq C2 exon
GTGGTGTTTGGACTGAGTGGAAGAAAGGTGCACCTGGTGGTGGATGGGCTGAGGGCCCAGGAAGGCAGTTTGCCTGGAAACTCTACCATCAGCCCCAGAGAACAGGTTTACCTGGGGTTGTCACCATCAAGAAAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421:ENSMUST00000092070:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(44.6=87.1)
A:
NA
C2:
PF0221019=Laminin_G_2=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types