MmuINT1022401 @ mm10
Intron Retention
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76718652-76719924:-
Coord C1 exon
chr15:76719796-76719924
Coord A exon
chr15:76718900-76719795
Coord C2 exon
chr15:76718652-76718899
Length
896 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGCCTGCTAACCTGTTTCAGGAG
3' ss Score
6.5
Exon sequences
Seq C1 exon
GCAGTTACATCTGTTACATCTGGGAACCAAGGAGAGCCCAATGGAGGCTGCCGTGCCAGTGATGGGACTGTCGTGCCAGTGACGAGCAGGAGGCTCTCAGTATAGGCACAGGAAGAGGCCTAGGGCAAG
Seq A exon
GTAAGGACCATCAAGGAAAGATGGCTTTTGCTTTTGTTTTTATTGGGGTGGGGGGAGGAGTTTTGTTGTTGTTGCTCCCTTTAAAAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTAAACGCACATCTGTTGGGAGTGGGGAATGCTCATACAGGTCAGAGGCCAACTTTGTGGAGTTGCTTCTTCTACCTTTATGTGGGTTGGGTAGATGCAGCTCAGGTCACCAGGCTGGCCAGGCAAGTGTCTTTACTTGTATAGCTATTTTGGAGCCTTTGTATAGGTTTTACCAAGAGTAAAAGACAGGTAGGGAGCCCTTTTTTCCCTTTCCTTTTTTCTTTCTTTGTTTCTTTGTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAGACAAATATCAGTATATATATAGCCTTGACCAACCTGGAACTCACCAAGTAGACCAGTCTGGAGTGCTGGTTTGTTTTGGTTGGTTTGGTTTGGTTTGGTTTTTCGGGTTTTTGGTTTTTGTTTGGTTTTTCAAGTTGGGGGTCTCTCTGTGCAGCCTTGACTGCTCTTGAATTTCACCCTGTAGAAGTCAAACTCATAGAGGTCTGTCTCCCAAGGAAATTCTGGGATTAAAGGCTGCACCACCATTGCCTGGCCCCTGAGTACTAAGTCTCACTGTGGTCCAGCCAACCTGGCTTGGAAAATATAGCTTAGACCTGGCCTTGAACTTACAACAATCCGGCTGCCTCAGCTTCCCCAGTTTAGGTTAAGAGCATAACCCACCATGCCTGGCATTACATTCCTGCACAAGCACTGGCTGGATAATGTTAGCACTGGCCTGCTAACCTGTTTCAG
Seq C2 exon
GAGGCGCATCCTATCCAGGTCCATTCCCTGGGGAAGCCACAGCTTCCTGGTGGGGCTCTTCGGAAATGGCCCTAAGGGCCCCCACGCTGCTGCTGCTACTGCTGGGGTTATTGTTGCTGCCGCTGCTGCCTGGACTCCCACCCCGCGCCACTGGCTGTCCCGCCGCCTGCCGCTGCTACAGCGCCACAGTGGAGTGTGGCGCTCTACGGTTGCGCGTGGTCCCACCGGGAATCCCTCCGGGGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707:ENSMUST00000049956:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTACATCTGTTACATCTGGGA
R:
CCACGCGCAACCGTAGAG
Band lengths:
348-1244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types