MmuINT1023684 @ mm10
Intron Retention
Gene
ENSMUSG00000044021 | Muc19
Description
mucin 19 [Source:MGI Symbol;Acc:MGI:2676278]
Coordinates
chr15:91885067-91886261:+
Coord C1 exon
chr15:91885067-91885216
Coord A exon
chr15:91885217-91886166
Coord C2 exon
chr15:91886167-91886261
Length
950 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTGTCTATTTTCTTCCAGAGA
3' ss Score
9.97
Exon sequences
Seq C1 exon
GTCTTTGTGGTTCCTTCAACAATAAGGCAGAAGATGATTTCATGTCAAGTCAGAACATTTTGGAGAGCACAGCTCAGGCATTTGCTAACTCCTGGGAGATGATGCCTTGCTCTGAGGGAAGCCCCTCTTCCTGTGTCAGCATTGAAACAG
Seq A exon
GTGAGAGCCATTGAGCGTCAAACTGGCGTTAAAAGTTGGTGCTGGTACTTGCAGACTTGTGCCGATAATCGTAAGAACACAGCCAATCCCCTTGCCTCTAGCTAGTATTTGTTATACTGACCCAGTTTTAGAAGACAAGGACTTCACTTATTTTCATTTTTATATGGAAACAGTGTTTAGGAGAAATGTTAGCTGGATTGGTAGAAGATGACAGCTGGCGTGAAGATTTTACCTTTGAGTGCACTCTATGTCCACTGTTGTATTAAACTTTTTTTTTAATTTATTTTTTTTAGTTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCAGACCCTCCCTCCCTCCCCCCCCCCGGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCCATACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCACTAGGCCATCTTCTGCTACATATACAGCTAGAGACATGAGCTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGAGTTGCAAACCCCTTTAGCTCCTTGTGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGCTGACTGTGAGCATCCACTTCTCTGTTTGCCAGGCCCTGGCATAGCCTCACAAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGTATATGCAATGGTGTTAGCGTTTGCAGGCTGATTATGGGATGGATCCCTGGGTATGGCAGTCTCTAGTTGGTCCATCCTTTCGTAAACTTAATGACACTGAATTTGATCCATCACAGCAAACTACTGTGAGAGGAAAAACTCTGCATGGAGGCAGAACTGTCTGAAGTACACAGCTTTCTTTTAAGTTCAAGAAACTTAGATGTTGCTGAGACTAACTCTGTCTATTTTCTTCCAG
Seq C2 exon
AGAAGTTTGCTGAAAGTAACTGTGAGATTCTTCTCAGTTCAAGTGGGCCTTTTGCTGCTTGTCATCAGACTGTGAACCCCAAATTCTATCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044021:ENSMUST00000160242:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTCCTTCAACAATAAGGCA
R:
TCATGATAGAATTTGGGGTTCACAGT
Band lengths:
239-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types