MmuINT1027547 @ mm10
Intron Retention
Gene
ENSMUSG00000032493 | Prss44
Description
protease, serine 44 [Source:MGI Symbol;Acc:MGI:1920586]
Coordinates
chr9:110813994-110814756:+
Coord C1 exon
chr9:110813994-110814348
Coord A exon
chr9:110814349-110814599
Coord C2 exon
chr9:110814600-110814756
Length
251 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CCCTCACTAACCTGCTCCAGCTT
3' ss Score
4.01
Exon sequences
Seq C1 exon
GGAGGAGGAGGAGGCGCTACAACAGGTTGAGGCCTTGGCGGTGGCATGGCCTTCCAGGGCTGTGACTGCTTCGGCCTTTTGGTCTGGCTCTTGCTGCTTCAGACGCGATTGGGCAAGGCTCGTATGGTTCCAGGGACGCCGTCTCTTTCTCCTCTCCCCTCAGAGAATGGCCTAGATGACTCGGGTGTAAACCCACAAGAGAGGCCACTCACAGGGATGCCTGAGACCTCGTTGCCCCGCAAGCCTGGGGACAGCACGAGGCCCCTTGATTCGATGGCATTTACTCCAGGTCAATCTTTTTCAACCATGAGTCTGTCAAGACAACCGTTTCCAACATGGGTTCCACCCACTTCAG
Seq A exon
GTGAAGTTTCTGGGCCGGCCCCGCCCCGCCCCGCCCCGCCCCGCCCACCTCCCCCCCGCATTGAACTGGCCTGGACCCGGGGGTTGGGGCTGAGAGGACACACCATTCCCTGATGAGTCTTTGAGATCCACTCACACCTGCCCTGGGATTTTCGGGGGGTCAGAGCTTTGTGCTCCAGGTTGTGAGGATCTGGCGGGTGGTGGAGCGGCAACAGCTTACCTTCAGGCCCTCCCCTCACTAACCTGCTCCAG
Seq C2 exon
CTTGTGGCCACAGAACTGCAAGGATAGTTGGTGGAAGGCCTGCGCCAGCGAGGAAGTGGCCGTGGCAGGTGAGCCTGCAGGTCCACAAGCAGCACATCTGTGGTGGCTCCCTCATCAGCAAATGGTGGGTGATTACAGCAGCCCACTGTGTATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032493:ENSMUST00000098345:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=NA C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.2=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGGCAAGGCTCGTATGG
R:
GCAGGCCTTCCACCAACTATC
Band lengths:
292-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types