MmuINT1027856 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128516073-128516930:-
Coord C1 exon
chr6:128516816-128516930
Coord A exon
chr6:128516183-128516815
Coord C2 exon
chr6:128516073-128516182
Length
633 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TGTTTTGTTTTGTTTTTCAGGAA
3' ss Score
12.57
Exon sequences
Seq C1 exon
GCAGATGATAAAGGATGTTTCAGACAAGTTGTAAAAACCAAAGTATTCCAGCTCAGACAAAAAGGCCACGACATGAAGATAGAGGTGGAAGCCAAAATCAAAGAGGAAGGAACAG
Seq A exon
GTTTGTATTGGCTTGTTTGTTTTTTTTAAATAAATGTCAATCAAGCAGAAACTTATCAAACTTCCATTCCATTTTGAATACTTTATGGTGTCTGCATCTTGTGAAAGTGGCAGGTTGCCAACGTCAAGAAATAAAATATTTAACAACAGAAGGTGTGTGGGTGTGTTTGTGTGTATGTGTGTAACTGTGATAAATTTTCCGTAAGAAATATAAGATGTAAGAAGAGAGTGGTTGTAAAGGGAAGTAATTAATTCTAATGCAGAGGCAGAAGAGCGATTCTTAAGCTTGCACCTGATGTGCTTTGTGGAGGGAGCGTGATGCGTGGAAAGATGAGTGATGGGCTGAGAAAAGCAGGCAAGCACACTCATTCTCAGGATGGAGAATTCTGAACAGCATGGCTAGCTTCAGATGTATGTGATAATGACCTAAACGAACAGATACTTTAAAATAATGCTAACAAAAGATATACAGGAAAAATTAAATATGTGTTGGATATGATACCTCATAAAGTATTCACAGATTATTGTAGCATCCTATAGTAACAGAGGAGAGCTGAGGTGGAAGTAGAAAGTAAGTTTTGAATCCACAATACTGAATTCGTGGTGTTTTGTTTTGTTTTGTTTTGTTTTTCAG
Seq C2 exon
GAATAGAACTAACTGGTATTGGATCATGTGAAATAGCAAATGCCTTAAGCAAACTGAAATTTACTAAAGTAAATACAAATTACAGGCCTGGGCTACCTTTCTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGATAAAGGATGTTTCAGACA
R:
TCCAGAGAAAGGTAGCCCAGG
Band lengths:
222-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types